Teaching Materials (1-3 of 3)

1. Phage Comparative Genomics Lab Manual

   30 Aug 2021 | Teaching Materials | Contributor(s):

   By Andrew Kapinos¹, Canela Torres², Amanda Freise²

   1. University of California, San Diego 2. University of California, Los Angeles

   A lab manual containing detailed instructions for several bioinformatics tools (dot plots, Phamerator maps, phylogenetic trees, and gene content similarity), all of which enable students to perform...

   https://qubeshub.org/publications/2745/?v=1

2. (Online) Figure of the Week: Skills for Interpreting Comparative Genomics Figures

   18 Jun 2020 | Teaching Materials | Contributor(s):

   By Robert E Furrow

   University of California, Davis

   Students use their number sense to make observations and explain or guess at patterns shown, discussing in a weekly online Q&A forum.

   https://qubeshub.org/publications/1937/?v=1

3. Genome Sequence Data in R using Biostrings (Swirl Lesson)

   09 Jun 2020 | Teaching Materials | Contributor(s):

   By Robert E Furrow

   University of California, Davis

   By the end of this lesson, students should be able to load FASTA files into R as DNAStringSets and use width() and alphabetFrequency(), combined with other functions like sum() and mean(), to...

   https://qubeshub.org/publications/1898/?v=1