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CourseSource 2.0: Finding high quality field-tested OERs, publishing evidence-based teaching activities, and promoting community collaborations.
26 Jul 2021 | Teaching Materials | Contributor(s):
By Erin Vinson
University of Maine
Workshop materials related to the CourseSource platform. Presented at the the 2021 BIOME Institute.
Inquiry-based hypothesis testing using phylogenetic trees in MEGA
17 Jun 2021 | Teaching Materials | Contributor(s):
By Kristin Hultgren
A key learning objective in biology is applying bioinformatics tools to test a real-life question. These inquiry-based modules have students assemble and align data, and construct simple...
Sequence Similarity: Introducing Biological Databases to Community College Biology Students
01 Jun 2021 | Teaching Materials | Contributor(s):
By Jennifer Katcher
This laboratory module, published on CourseSource, leads introductory biology students in the exploration of a basic set of bioinformatics concepts and tools.
Developing a phylogram from computational resources.
By Melanie Lenahan1, Shea Cinquemani1
Raritan Valley Community College
Introductory Video and worksheets on Module 1 and 2 on "Sequence Similarity: An inquiry based and under the hood..."
31 May 2021 | Teaching Materials | Contributor(s):
By Alice Tarun
St. Lawrence University
The video walks the students to complete Module 1 and 2 on Sequence Similarly and Alignment adapted from Tapprich (2019) and Hudson Alpha that teaches these modules within the context of the...
Using Synthetic Biology to Teach Data Science
30 Jul 2019 | Teaching Materials | Contributor(s):
By Margaret S Saha1, Beteel Abu-Ageel1, Sanjana Challa1, Xiangyi Fang1, Chai Hibbert1, Anna Isler1, Elias Nafziger1, Adam Oliver1, Hanqiu Peng1, Julia Urban1, Vivian Zhu1
College of William and Mary
Poster and supplemental materials on using synthetic biology to introduce students to meaningful data mining, analysis, and application to engineering novel biological constructs.
26 Jun 2019 | Teaching Materials | Contributor(s):
Abstract for poster on using synthetic biology to introduce students to meaningful data mining, analysis, and application to engineering novel biological constructs.
Bioinformatics: Investigating Sequence Similarity - A Plant Biology Approach
29 May 2019 | Teaching Materials | Contributor(s):
By Ami Erickson
This laboratory module is a modification of the original published on CourseSource with a focus on plant biology. In the final activity, students conduct a BLAST to compare histone protein...
Sequence Similarity Resource Adaptation: Exploring Ebola Virus
16 May 2019 | Teaching Materials | Contributor(s):
By William Tapprich
University of Nebraska-Omaha
This adaptation of the sequence similarity resource provides biology students with a basic set of bioinformatics concepts and tools. These concepts and tools are used to explore relationships...
Sequence Similarity: An inquiry based and "under the hood" approach for incorporating molecular sequence alignment in introductory undergraduate biology courses
02 May 2019 | Teaching Materials | Contributor(s):
By Adam Kleinschmit1, Benita Brink1, Steven Roof2, Carlos Christopher Goller3, Sabrina Robertson3
1. Adams State University 2. Fairmont State University 3. North Carolina State University
Quantifying and Visualizing Campus Tree Phenology
18 Apr 2019 | Teaching Materials | Contributor(s):
By Nate Emery1, Caleb Trujillo1, Andrew Jarosz1, Tammy M Long1
Michigan State University
This lesson, published on CourseSource, enables collaborative teams to collect, quantify, and analyze observable seasonal changes in nature.
Using Undergraduate Molecular Biology Labs to Discover Targets of miRNAs in Humans
04 Jan 2019 | Teaching Materials | Contributor(s):
By Adam Idica1, Jordan Thompson1, Irene Munk Pedersen1, Pavan Kadandale1
University of California, Irvine
In this lesson, we describe an easily adaptable lab module that can be used in existing undergraduate molecular biology lab courses to conduct authentic scientific research, published in CourseSource
Using computational molecular modeling software to demonstrate how DNA mutations cause phenotypes
By Tara Phelps-Durr
This lesson is a five-week series of laboratory activities designed to help students transition from applying lower order thinking skills to the central dogma to applying higher-order thinking skills.
Teaching RNAseq at Undergraduate Institutions: A tutorial and R package from the Genome Consortium for Active Teaching
By Mark Phillip Peterson1, Jacob T Malloy2, Vincent P Buonaccorsi2, James H Marden3
1. Viterbo University 2. Juniata College 3. Pennsylvania State University
This lesson plan was created to teach RNAseq analysis as a part of GCAT-SEEK network. It is provided here, both in finished form and with the modifiable source code, to allow flexible adaptation to...
Making toast: Using analogies to explore concepts in bioinformatics
By Kate L. Hertweck
University of Texas at Tyler
Module using analogies to introduce students to genomics
Infectious Chocolate Joy with a Side of Poissonian Statistics: An activity connecting life science students with subtle physics concepts
By Eric T. Holland1, Greg Manley1, Tamara Chiba1, Rona Ramos1, Simon Mochrie1, Jennifer Frederick1
Lesson on what it means for biological processes to be Poissonian, published in CourseSource
Homologous chromosomes? Exploring human sex chromosomes, sex determination and sex reversal using bioinformatics approaches
By Kelsey Metzger
University of Minnesota, Rochester
In this four- part guided activity, students will learn about the structure and function of human autosomal and sex chromosomes, view and interpret gene maps, and gain familiarity with basic...
A Hands-on Introduction to Hidden Markov Models
By Tony Weisstein1, Elena Gracheva2, Zane Goodwin2, Zongtai Qi2, Wilson Leung2, Christopher D. Shaffer2, Sarah C.R. Elgin2
1. Truman State University 2. Washington University in St. Louis
A lesson in which students will understand the basic structure of an HMM, the types of data used in ab initio gene prediction, and its consequent limitations.
Exploration of the Human Genome by Investigation of Personalized SNPs
03 Jan 2019 | Teaching Materials | Contributor(s):
By Lani C. Keller
To increase students' interest in their own genomes, this computer-based laboratory lesson is designed to be coupled with the opportunity for the students to be genotyped by the consumer sequencing...
Bioinformatics - Investigating Sequence Similarity
04 Dec 2018 | Teaching Materials | Contributor(s):
This laboratory module, leads introductory biology students in the exploration of a basic set of bioinformatics concepts and tools.