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Tackling "Big Data" with Biology Undergrads: A Simple RNA-seq Data Analysis Tutorial Using Galaxy
28 Aug 2021 | Teaching Materials | Contributor(s):
By Matthew Anthony Escobar*1, William Morgan2, Irina Makarevitch3, Sabrina Robertson4
1. California State University San Marcos 2. The College of Wooster 3. Hamline University 4. North Carolina State University
Analyzing high-throughput DNA sequence data is a fundamental skill in modern biology. However, real and perceived barriers such as massive file sizes, substantial computational requirements, and...
CURE-all: Large Scale Implementation of Authentic DNA Barcoding Research into First-Year Biology Curriculum
By Oliver Hyman*1, Elizabeth Doyle1, Joseph Harsh1, Joanna Mott2, Andrea Pesce1, Bejan Rasoul1, Kyle Seifert1, Ray Enke1
1. James Madison University 2. California State University
Growing calls in science education reform have emphasized wide-scale engagement of first-year undergraduate students in authentic research experiences; however, large course enrollments, inadequate...
Meiosis: A Play in Three Acts, Starring DNA Sequence
27 Aug 2021 | Teaching Materials | Contributor(s):
By Dina L Newman1, Leslie Kate Wright1
Rochester Institute of Technology
Meiosis is well known for being a sticky topic that appears repeatedly in biology curricula. We observe that a typical undergraduate biology major cannot correctly identify haploid and diploid...
Using DNA Subway to Analyze Sequence Relationships
28 May 2018 | Teaching Materials | Contributor(s):
By Jason Williams1, Ray A. Enke2, Oliver Hyman2, Emily Lescak3, Sam S Donovan4, William Tapprich5, Elizabeth F Ryder6
1. DNA Learning Center 2. The Department of Biology, James Madison University; The Center for Genome & Metagenome Studies, James Madison University 3. University of Alaska 4. University of Pittsburgh 5. University of Nebraska-Omaha 6. Worcester Polytechnic Institute
This is a bioinformatics exercise using the DNA Subway Blue Line, a user-friendly pipeline of bioinformatics tools, to analyze a collection of mosquito DNA bar-code sequences.
Intro to DNA Barcoding
By Oliver Hyman1, Andrea Pesce2, Elizabeth Doyle2, Ray A Enke1
1. The Department of Biology, James Madison University; The Center for Genome & Metagenome Studies, James Madison University 2. James Madison University
This is a classroom tested introductory lesson & activity to introduce DNA Barcoding and DNA Subway Blue Line. It is for novices and will fit into a 30-45 min lecture or lab class period.
Intro to DNA Subway Blue Line
This is a classroom tested introductory lesson & activity to introduce DNA Barcoding and DNA Subway Blue Line. It is for novices and will fit into a 1 hr 50 min lecture or lab class period.
DNA Subway Learning Resources
18 Oct 2017 | Teaching Materials | Contributor(s):
By Jason Williams
DNA Learning Center
DNA Subway is a NIBLSE Recommended resource. This is a collection of learning resources associated with DNA Subway.
This is a bioinformatics exercise using DNA Subway
16 Oct 2017 | Teaching Materials | Contributor(s):
Cold Spring Harbor Laboratory