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1. Module 5: The Need for an Open Reading Frame

   25 Jul 2020 | Teaching Materials | Contributor(s):

   By Carina Howell¹, Leocadia Paliulis², Anne Rosenwald³

   1. Lock Haven University 2. Bucknell University 3. Georgetown University

   In this module, students will learn to identify the open reading frames for a given gene, and define the phases of the splice donor and acceptor sites.

   https://qubeshub.org/publications/1993/?v=1

2. Module 3: Transcription, Part II: What Happens to the Initial Transcript Made by RNA pol II?

   25 Jul 2020 | Teaching Materials | Contributor(s):

   By Cathy Silver Key¹, Chiyedza Small², Laura Reed³

   1. North Carolina Central University 2. Medgar Evers College CUNY 3. The University of Alabama

   This module teaches about the three key steps that are involved in converting the pre-mRNA into a mature mRNA: 1) The addition of a 5’ cap, 2) The addition of a 3’ poly(A) tail, 3) The removal of...

   https://qubeshub.org/publications/1991/?v=1

3. Module 2: Transcription Part I: From DNA Sequence to Transcription Unit

   25 Jul 2020 | Teaching Materials | Contributor(s):

   By Maria Santisteban¹, Alexa Sawa²

   1. University of North Carolina - Pembroke 2. College of the Desert

   This module illustrates how a primary transcript (pre-mRNA) is synthesized using a DNA molecule as the template. Students will learn about the importance of the 5' and 3' regions of the gene for...

   https://qubeshub.org/publications/1990/?v=1

4. Module 1: Introduction to the Genome Browser: What is a Gene?

   25 Jul 2020 | Teaching Materials | Contributor(s):

   By Joyce Stamm¹, Jennifer Kennell², Wilson Leung³, Leocadia Paliulis⁴, Srebrenka Robic⁵, Anne Rosenwald⁶

   1. University of Evansville 2. Vassar College 3. Washington University in St. Louis 4. Bucknell University 5. Agnes Scott College 6. Georgetown University

   This lesson introduces the University of California Santa Cruz genome browser to students, walking them through some of the key features so that it can be used for analysis of gene structure.

   https://qubeshub.org/publications/1989/?v=1

5. GEA Introductory lesson on RNA-Seq

   25 Jul 2020 | Teaching Materials | Contributor(s):

   By Jason Williams¹, Judy Brusslan², Ray Enke³, Matthew Escobar⁴, Vince Buonaccorsi⁵

   1. Cold Spring Harbor Laboratory 2. California State University Long Beach 3. James Madison University 4. California State University San Marcos 5. Juniata College

   This RNA-Seq lesson uses the CyVerse VICE Platform and Jupyter notebooks to examine the expression of the leptin gene in samples from a mouse experimental design evaluating diet (high-fat vs....

   https://qubeshub.org/publications/1988/?v=1