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Tags: Lab

Resources (1-20 of 216)

  1. 3D breast cancer tissue reconstruction

    17 Sep 2018 | Teaching Materials | Contributor(s):

    By Jeremy M Wojdak1, Kerri-Ann Norton2

    1. Radford University 2. Johns Hopkins University

    This module allows students to follow a researcher as she discovers new features of breast cancer tissue architecture, using 3D reconstructions of histological specimens.

    https://qubeshub.org/qubesresources/publications/543/?v=2

  2. 3D breast cancer tissue reconstruction

    24 Aug 2018 | Teaching Materials | Contributor(s):

    By Jeremy M Wojdak1, Kerri-Ann Norton2

    1. Radford University 2. Johns Hopkins University

    This module allows students to follow a researcher as she discovers new features of breast cancer tissue architecture, using 3D reconstructions of histological specimens.

    https://qubeshub.org/qubesresources/publications/543/?v=1

  3. A Fun Introductory Command Line Exercise: Next Generation Sequencing Quality Analysis with Emoji!

    07 Jun 2019 | Teaching Materials | Contributor(s):

    By Rachael St. Jacques1, Max Maza1, Sabrina Robertson2, Guoqing Lu3, Andrew Lonsdale4, Ray A Enke5

    1. Department of Biology, James Madison University 2. Department of Psychology & Neuroscience, University of North Carolina at Chapel Hill 3. Department of Biology and School of Interdisciplinary Informatics, University of Nebraska Omaha 4. ARC Centre of Excellence in Plant Cell Walls, Melbourne University 5. James Madison University

    This resource is a fun computer-based intro to command line programming. The activity takes FASTQ NGS data files and runs a fun program called FASTQE.

    https://qubeshub.org/qubesresources/publications/1092/?v=2

  4. A Fun Introductory Command Line Exercise: Next Generation Sequencing Quality Analysis with Emoji!

    28 Feb 2019 | Teaching Materials | Contributor(s):

    By Rachael St. Jacques1, Max Maza1, Sabrina Robertson2, Guoqing Lu3, Andrew Lonsdale4, Ray A Enke5

    1. Department of Biology, James Madison University 2. Department of Psychology & Neuroscience, University of North Carolina at Chapel Hill 3. Department of Biology and School of Interdisciplinary Informatics, University of Nebraska Omaha 4. ARC Centre of Excellence in Plant Cell Walls, Melbourne University 5. James Madison University

    This resource is a fun computer-based intro to command line programming. The activity takes FASTQ NGS data files and runs a fun program called FASTQE.

    https://qubeshub.org/qubesresources/publications/1092/?v=1

  5. A Hands-on Introduction to Hidden Markov Models

    04 Jan 2019 | Teaching Materials | Contributor(s):

    By Tony Weisstein1, Elena Gracheva2, Zane Goodwin2, Zongtai Qi2, Wilson Leung2, Christopher D. Shaffer2, Sarah C.R. Elgin2

    1. Truman State University 2. Washington University in St. Louis

    A lesson in which students will understand the basic structure of an HMM, the types of data used in ab initio gene prediction, and its consequent limitations.

    https://qubeshub.org/qubesresources/publications/999/?v=1

  6. A Structured Inquiry Approach to Cotyledon Phenotyping

    20 Dec 2018 | Teaching Materials | Contributor(s):

    By Megan L Van Etten

    Pennsylvania State University

    In this lab, students will work with messy data to try to answer the question “How do plants inherit cotyledon color?”

    https://qubeshub.org/qubesresources/publications/968/?v=1

  7. A Structured Inquiry Approach to Cotyledon Phenotyping

    27 Mar 2018 | Teaching Materials | Contributor(s):

    By Lindsey Tuominen

    Metropolitan State University

    In this lab, students will work with messy data to try to answer the question “How do plants inherit cotyledon color?”

    https://qubeshub.org/qubesresources/publications/428/?v=1

  8. Additional Figures of the Day - Parasitology

    30 May 2019 | Teaching Materials | Contributor(s):

    By Elizabeth Hamman

    Radford University

    These additional figures were used in a Parasitology course (juniors and seniors) at Radford University.

    https://qubeshub.org/qubesresources/publications/1251/?v=1

  9. AIM-UP! Coal balls lesson

    22 Jan 2018 | Teaching Materials | Contributor(s):

    By Monte Garroutte1, Jordan Metzgar1, Hirotsugu Mori1

    University of Alaska Museum of the North

    In this activity, students learn about ancient plant life and climate change by examining coal balls. In addition to the lesson itself, information is provided on where to purchase coal ball peel...

    https://qubeshub.org/qubesresources/publications/334/?v=1

  10. AIM-UP! GIS and bats lesson

    22 Jan 2018 | Teaching Materials

    This lesson introduces the use of GIS (geographic information systems) in the study of biological questions, using bats as the model organism. This activity requires access to GIS software.

    https://qubeshub.org/qubesresources/publications/335/?v=1

  11. Amphibian Diversity: Species Richness and Precipitation

    19 Mar 2019 | Teaching Materials | Contributor(s):

    By Debra Linton1, Anna Monfils1, Molly Phillips2, Libby Ellwood3

    1. Central Michigan University 2. iDigBio, Florida Museum of Natural History, University of Florida 3. iDigBio

    This activity will explore how natural history specimen data can be used to investigate the relationship between precipitation levels in a region and species diversity of amphibians.

    https://qubeshub.org/qubesresources/publications/1101/?v=1

  12. Ancient Insects

    10 May 2019 | Teaching Materials | Contributor(s):

    By Susan Butts1, Talia Karim2, Chris Norris1

    1. Yale Peabody Museum of Natural History 2. University of Colorado, Boulder

    Create a gallery of fossil organisms and identify distinctive body parts (wings, suckers, modified appendages) from the collection. Analyze and interpret these features to predict what type of...

    https://qubeshub.org/qubesresources/publications/1169/?v=1

  13. Avian Censys Analysis

    23 Jan 2019 | Teaching Materials | Contributor(s):

    By Darcy Taniguchi

    This Swirl course uses ecological data of bird counts and habitat variables to estimate inter-observer variability and the relationship of birds with habitat variables.

    https://qubeshub.org/qubesresources/publications/1025/?v=1

  14. AVIDA exercise on the role of mutation in evolution

    21 May 2019 | Teaching Materials | Contributor(s):

    By William Beachly

    Hastings College

    A tested exercise at the college freshmen level using AVIDA-Ed to generate and test a hypothesis about the relationship between mutation rate and the probability of evolving a useful function in...

    https://qubeshub.org/qubesresources/publications/1224/?v=1

  15. BAG Lab Manual Yeast

    30 May 2019 | Teaching Materials | Contributor(s):

    By Lisa Scheifele

    Loyola University Maryland

    This is the lab manual for yeast chromosome synthesis

    https://qubeshub.org/qubesresources/publications/1241/?v=1

  16. Behavioral Genetics: Investigating the genes of a complex phenotype in fruit flies

    03 Jan 2019 | Teaching Materials | Contributor(s):

    By Craig E. Stanley, Jr., Charles Hadley S. King, IV, Michelle Thornton, Rob J. Kulathinal

    Introductory genetics laboratory published as GSA Learning Resource

    https://qubeshub.org/qubesresources/publications/988/?v=1

  17. Binomial test

    23 Jan 2019 | Teaching Materials | Contributor(s):

    By Stephen Gosnell

    Baruch College, City University of New York

    This lesson focused on introducing students to binomial data analysis and reinforcing concepts of confidence intervals, p-value interpretation, and one- vs two-sided tests.

    https://qubeshub.org/qubesresources/publications/1022/?v=1

  18. BIO103R: Bio 103 and 104 Labs in R at URI

    29 Oct 2018 | Teaching Materials | Contributor(s):

    By Rachel Schwartz1, Linda Forrester1

    University of Rhode Island

    GitHub repository for Bio 103 and 104 Labs in R at University of Rhode Island

    https://qubeshub.org/qubesresources/publications/886/?v=1

  19. Biogeography of plant-associated fungi: who lives where and why?

    28 May 2018 | Teaching Materials | Contributor(s):

    By Naupaka Bruce Zimmerman1, Peter Vitousek2

    1. University of San Francisco 2. Stanford University

    This dataset of fungal communities associated with the leaves an endemic Hawaiian tree provides students opportunities to explore relationships between environmental variables and microbial...

    https://qubeshub.org/qubesresources/publications/596/?v=1

  20. Bioinformatics - Investigating Sequence Similarity

    04 Dec 2018 | Teaching Materials | Contributor(s):

    By Adam Kleinschmit1, Benita Brink1, Steven Roof2, Carlos Christopher Goller3, Sabrina Robertson3

    1. Adams State University 2. Fairmont State University 3. North Carolina State University

    This laboratory module, leads introductory biology students in the exploration of a basic set of bioinformatics concepts and tools.

    https://qubeshub.org/qubesresources/publications/56/?v=4