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Sampling Distributions and Null Distributions: two swirl lessons in R
10 May 2019 | Teaching Materials | Contributor(s):
By Rachel Hartnett
Oklahoma State University
There are two complementary lessons. The first covers how sampling distributions are made and ID's their key properties. The second covers how null distributions and how the test statistic of a...
Importing Data into R
This short swirl lesson on importing data is designed to 1) get a basic understanding in how tables are read into R and some common issues and 2) develop an individual set of instructions for...
By Susan Butts1, Talia Karim2, Chris Norris1
1. Yale Peabody Museum of Natural History 2. University of Colorado, Boulder
Create a gallery of fossil organisms and identify distinctive body parts (wings, suckers, modified appendages) from the collection. Analyze and interpret these features to predict what type of...
Investigating human impacts on stream ecology: Intro to R
08 May 2019 | Teaching Materials | Contributor(s):
By Kristen Kaczynski
California State University - Chico
This resource uses the Human Impact on Stream Ecology data set, background and questions and provides students an very general introduction to using R. Students perform basic summary statistics and...
Sequence Similarity: An inquiry based and "under the hood" approach for incorporating molecular sequence alignment in introductory undergraduate biology courses
02 May 2019 | Teaching Materials | Contributor(s):
By Adam Kleinschmit1, Benita Brink1, Steven Roof2, Carlos Christopher Goller3, Sabrina Robertson3
1. Adams State University 2. Fairmont State University 3. North Carolina State University
This laboratory module, published on CourseSource, leads introductory biology students in the exploration of a basic set of bioinformatics concepts and tools.
Discrete Math Modeling with Biological Applications (Course Materials)
26 Apr 2019 | Teaching Materials | Contributor(s):
By Carrie Diaz Eaton
Bates College and QUBES
These are the materials for Math 214 offered at Rhodes College.
Calling Bull in an Age of Big Data with R
Use the calling bull course to introduce students to data, ethics, visualization, and R.
Quantifying and Visualizing Campus Tree Phenology
18 Apr 2019 | Teaching Materials | Contributor(s):
By Nate Emery1, Caleb Trujillo1, Andrew Jarosz1, Tammy M Long1
Michigan State University
This lesson, published on CourseSource, enables collaborative teams to collect, quantify, and analyze observable seasonal changes in nature.
Data is the New Science
12 Apr 2019 | Teaching Materials | Contributor(s):
By Anna Monfils1, Debra Linton1, Libby Ellwood2, Molly Phillips3
1. Central Michigan University 2. iDigBio 3. iDigBio, Florida Museum of Natural History, University of Florida
In this module, students will be introduced to some emerging biodiversity data resources. They will be asked to think critically about the strengths and utility of these data resources and apply...
Fantastic Birds and Where to Find Them
20 Mar 2019 | Teaching Materials | Contributor(s):
By Molly Phillips1, Kathryn Green2
1. iDigBio, Florida Museum of Natural History, University of Florida 2. North Carolina Sate University
5E lesson plan for middle/high school aligned to NGSS standards.
Amphibian Diversity: Species Richness and Precipitation
19 Mar 2019 | Teaching Materials | Contributor(s):
By Debra Linton1, Anna Monfils1, Molly Phillips2, Libby Ellwood3
1. Central Michigan University 2. iDigBio, Florida Museum of Natural History, University of Florida 3. iDigBio
This activity will explore how natural history specimen data can be used to investigate the relationship between precipitation levels in a region and species diversity of amphibians.
Species Range Over Space and Time
By Debra Linton1, Anna Monfils1, Libby Ellwood2, Molly Phillips3
In this module, students use data from natural history collections to look at range shifts related to climate variables over different time periods.
Liberating Data for Biodiversity Research
By Libby Ellwood1, Austin Mast2
1. iDigBio 2. Florida State University
The objectives of this exercise are to familiarize you with the information content of biodiversity specimens and their labels, the breadth of that information across geographic space and/or time.
Connecting Students to Citizen Science and Curated Collections
18 Mar 2019 | Teaching Materials | Contributor(s):
By Anna Monfils1, Erica Krimmel, Debra Linton1, Travis Marsico2, Ashley Morris3, Brad Ruhfel4
1. Central Michigan University 2. Arkansas State University 3. Middle Tennessee State University 4. University of Michigan
This educational module utilizes the traditional plant collection experience to engage students with biodiversity data protocols and resources available in our information-rich digital age.
Exploring Data with BISON
14 Mar 2019 | Teaching Materials | Contributor(s):
By Erica Krimmel
Natural History Museum of Los Angeles County
A module to explore aggregated observation and collection information, through BISON, or Biodiversity Information Serving Our Nation (https://bison.usgs.gov), a tool for visualizing GBIF data.
Processes that Regulate Patterns of Species and Genetic Diversity
12 Mar 2019 | Teaching Materials | Contributor(s):
By Anna M. McKee1, Gary T. Green2, John C. Maerz2
1. U.S. Geological Survey South Atlantic Water Science Center 2. The University of Georgia
TIEE Module- This activity was developed for an undergraduate upper level course for natural resources majors. Classes of 20 – 30 students work best for the activity.
A Fun Introductory Command Line Exercise: Next Generation Sequencing Quality Analysis with Emoji!
28 Feb 2019 | Teaching Materials | Contributor(s):
By Rachael St. Jacques1, Max Maza1, Sabrina Robertson2, Guoqing Lu3, Andrew Lonsdale4, Ray A Enke5
1. Department of Biology, James Madison University 2. Department of Psychology & Neuroscience, University of North Carolina at Chapel Hill 3. Department of Biology and School of Interdisciplinary Informatics, University of Nebraska Omaha 4. ARC Centre of Excellence in Plant Cell Walls, Melbourne University 5. James Madison University
This resource is a fun computer-based intro to command line programming. The activity takes FASTQ NGS data files and runs a fun program called FASTQE.
Island biogeography, spatial ecology, and macroinvertebrate species diversity in Richmond’s rock pools
22 Feb 2019 | Teaching Materials | Contributor(s):
By Nadia Bukach1, Todd Lookingbill1, Andrew Davidson2, James R Vonesh2, Kristine Grayson1
1. University of Richmond 2. Virginia Commonwealth University
Students investigate questions of community ecology and biogeography using data from an urban rock pool ecosystem. Using ArcGIS 10, students learn to create effective maps, calculate landscape...
Teaching logistic population growth and ecological modelling
23 Jan 2019 | Teaching Materials | Contributor(s):
By Robert F Smith
The lesson is designed to 1) teach students about the concept of logistic population growth, growth rates, and carrying capacity and 2) provide a basic introduction to ecological modeling and...
Avian Censys Analysis
By Darcy Taniguchi
This Swirl course uses ecological data of bird counts and habitat variables to estimate inter-observer variability and the relationship of birds with habitat variables.