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Using Synthetic Biology to Teach Data Science
26 Jun 2019 | Teaching Materials | Contributor(s):
By Margaret S Saha1, Beteel Abu-Ageel1, Sanjana Challa1, Xiangyi Fang1, Chai Hibbert1, Anna Isler1, Elias Nafziger1, Adam Oliver1, Hanqiu Peng1, Julia Urban1, Vivian Zhu1
College of William and Mary
Abstract for poster on using synthetic biology to introduce students to meaningful data mining, analysis, and application to engineering novel biological constructs.
Does Organelle Shape Matter? Exploring Cell Shape through the Allen Cell Explorer and High-content Microscopy Datasets
12 Jun 2019 | Teaching Materials | Contributor(s):
By Carlos Christopher Goller1, Kaitlyn Casimo
North Carolina State University
The morphology and localization of structures inside the cell are often assumed to fit the ideal images found in biology textbooks. This interrupted case study using high-throughput microscopy data...
11 Jun 2019 | Teaching Materials | Contributor(s):
By James Burton Deemy
College of Coastal Georgia
In this exercise students work in groups to design an agroecosystem to feed a Mars Colony while accounting for space and energy transfer limitations.
This is an exercise in island biogeography that allows students to reconstruct splits in the evolutionary history of several hypothetical frog species.
A Fun Introductory Command Line Exercise: Next Generation Sequencing Quality Analysis with Emoji!
07 Jun 2019 | Teaching Materials | Contributor(s):
By Rachael St. Jacques1, Max Maza1, Sabrina Robertson2, Guoqing Lu3, Andrew Lonsdale4, Ray A Enke5
1. Department of Biology, James Madison University 2. Department of Psychology & Neuroscience, University of North Carolina at Chapel Hill 3. Department of Biology and School of Interdisciplinary Informatics, University of Nebraska Omaha 4. ARC Centre of Excellence in Plant Cell Walls, Melbourne University 5. James Madison University
This resource is a fun computer-based intro to command line programming. The activity takes FASTQ NGS data files and runs a fun program called FASTQE.
Exploring how climate will impact plant-insect distributions and interactions using open data and informatics
06 Jun 2019 | Teaching Materials | Contributor(s):
By Wendy Clement1, Kathleen Prudic2, Jeffrey Oliver3
1. The College of New Jersey 2. University of Arizona 3. University of Arizona Libraries
This teaching module provides an entry point for students to learn about data science, open data repositories (e.g., citizen science data), and species distribution modeling to study the effects of...
03 Jun 2019 | Teaching Materials | Contributor(s):
By Lisa Dierker
E-book in .pdf format and customizable .iba format
Processes that Regulate Patterns of Species and Genetic Diversity - Intro Environmental Science
01 Jun 2019 | Teaching Materials | Contributor(s):
By Megan Kelly
Arrupe College of Loyola University Chicago
This activity was adapted for use in an intro non-majors Environmental Science course, with an emphasis on collaborative data collection.
Frayer model growth mindset
By Heather McGray
San Diego City College
A Frayer model worksheet for the concept of growth mindset.
The Effect of Climate Change on Butterfly Phenology - Intro Environmental Science
In this module, students practice interpreting the relationship between variables before exploring changes in butterfly phenology through the use of natural history collections data.
Modification of "Exploring the population dynamics of wintering bald eagles through long-term data" module
30 May 2019 | Teaching Materials | Contributor(s):
By Kaitlin Stack Whitney
Rochester Institute of Technology
This module is a modification of the Beckstead et al. module in TIEE Volume 7. It includes a meta-cognition based model and self reflection, no statistics, and is organized to be done in 1-2...
Modification of "The Effect of Climate Change on Butterfly Phenology" module by Linton et al.
This is a modification of the Linton et al. module in TIEE Volume 13. Students use data from digitized museum records of butterfly specimens in a modification with no homework (lab/workshop format)...
BAG Lab Manual Yeast
By Lisa Scheifele
Loyola University Maryland
This is the lab manual for yeast chromosome synthesis
Additional Figures of the Day - Parasitology
By Elizabeth Hamman
These additional figures were used in a Parasitology course (juniors and seniors) at Radford University.
Investigating human impacts on stream ecology: locally and nationally
29 May 2019 | Teaching Materials | Contributor(s):
By Jillian K. Decker
State University of New York - Rockland Community College
How does nutrient pollution impact stream ecosystems locally and nationally?
Processes that Regulate Patterns of Species and Genetic Diversity
This activity was developed for an undergraduate upper level ecology course for Environmental or Biological Science majors. Classes of ~20 students work best for the activity.
Calling Bull in an Age of Big Data with R
By Carrie Diaz Eaton
Bates College and QUBES
Use the calling bull course to introduce students to data, ethics, visualization, and R.
Bioinformatics: Investigating Sequence Similarity - A Plant Biology Approach
By Ami Erickson
This laboratory module is a modification of the original published on CourseSource with a focus on plant biology. In the final activity, students conduct a BLAST to compare histone protein...
Plant Defenses and Bioprospecting Mini-case Study
27 May 2019 | Teaching Materials | Contributor(s):
By John Anthony Barone
Columbus State University
This narrative mini-case study for use in undergraduate ecology courses reviews plant defense theory within the context of bioprospecting. Students learn about factors affecting plant defenses and...
Climate Diagrams Mini-Case Study for Ecology
26 May 2019 | Teaching Materials | Contributor(s):
This mini-case study provides undergraduate ecology students with experience in how to read climate diagrams and how to put them together. The activity includes a discussion of actual and potential...