All Categories (1-20 of 23)

1. A Laboratory Class Exploring Microbial Diversity and Evolution Using Online Databases, the Biology Workbench, and Phylogenetics Software

   out of 5 stars 

   29 Sep 2015 | | Contributor(s):: Sarah Boomer, Kelly Shipley, Bryan Dutton, Daniel Lodge

   Students assemble and align bacterial datasets using DNA information downloaded from the National Center for Biotechnology Information website and Biology Workbench.  Specifically, they compare unknown original DNA sequences (from, in our case, hot spring communities) to a backbone of...

2. Bioinformatics - Investigating Sequence Similarity

   31 Jan 2017 | Teaching Materials | Contributor(s):

   By Adam Kleinschmit¹, Benita Brink¹, Steven Roof², Komal Vig³

   1. Adams State University 2. Hampshire College 3. Alabama State University

   This laboratory module, leads introductory biology students in the exploration of a basic set of bioinformatics concepts and tools.

   https://qubeshub.org/publications/56/?v=1

3. Bioinformatics - Investigating Sequence Similarity

   05 Jun 2017 | Teaching Materials | Contributor(s):

   By Adam Kleinschmit¹, Benita Brink¹, Steven Roof², Komal Vig³

   1. Adams State University 2. Hampshire College 3. Alabama State University

   This laboratory module, leads introductory biology students in the exploration of a basic set of bioinformatics concepts and tools.

   https://qubeshub.org/publications/56/?v=2

4. Bioinformatics - Investigating Sequence Similarity

   05 Jul 2017 | Teaching Materials | Contributor(s):

   By Adam Kleinschmit¹, Benita Brink¹, Steven Roof², Komal Vig³, Carlos Christopher Goller⁴, Sabrina Robertson⁵

   1. Adams State University 2. Hampshire College 3. Alabama State University 4. North Carolina State University 5. NC State

   This laboratory module, leads introductory biology students in the exploration of a basic set of bioinformatics concepts and tools.

   https://qubeshub.org/publications/56/?v=3

5. Bioinformatics - Investigating Sequence Similarity

   04 Dec 2018 | Teaching Materials | Contributor(s):

   By Adam Kleinschmit¹, Benita Brink¹, Steven Roof², Carlos Christopher Goller³, Sabrina Robertson³

   1. Adams State University 2. Fairmont State University 3. North Carolina State University

   This laboratory module, leads introductory biology students in the exploration of a basic set of bioinformatics concepts and tools.

   https://qubeshub.org/publications/56/?v=4

6. Bioinformatics: An Interactive Introduction to NCBI

   03 Jan 2019 | Teaching Materials | Contributor(s):

   By Seth Bordenstein

   Marine Biological Laboratory

   Modules showing how the NCBI database classifies and organizes information on DNA sequences, evolutionary relationships, and scientific publications. And a module working to identify a nucleotide...

   https://qubeshub.org/publications/989/?v=1

7. Bioinformatics: Investigating Sequence Similarity - A Plant Biology Approach

   29 May 2019 | Teaching Materials | Contributor(s):

   By Ami Erickson

   This laboratory module is a modification of the original published on CourseSource with a focus on plant biology. In the final activity, students conduct a BLAST to compare histone protein...

   https://qubeshub.org/publications/1247/?v=1

8. Colon Cancer: A Case of Genetic Bad Luck

   03 Jan 2019 | Teaching Materials | Contributor(s):

   By Anne M. Casper

   Eastern Michigan University

   Case study developed for an introductory genetics class published in the National Center for Case Study Teaching in Science

   https://qubeshub.org/publications/992/?v=1

9. Colon Cancer: A Case of Genetic Bad Luck

   15 Mar 2023 | Teaching Materials | Contributor(s):

   By Anne M. Casper

   Eastern Michigan University

   Case study developed for an introductory genetics class published in the National Center for Case Study Teaching in Science

   https://qubeshub.org/publications/992/?v=2

10. Developing a phylogram from computational resources.

    01 Jun 2021 | Teaching Materials | Contributor(s):

    By Melanie Lenahan¹, Shea Cinquemani¹

    Raritan Valley Community College

    This laboratory module, published on CourseSource, leads introductory biology students in the exploration of a basic set of bioinformatics concepts and tools.

    https://qubeshub.org/publications/2404/?v=1

11. How to Find a Gene: Retrieving Information From Gene Databases

    23 Feb 2023 | Teaching Materials | Contributor(s):

    By Ah Rume Julie Park†¹, Maitreyi Upadhyay†¹, William J. Anderson¹, Amie L. Holmes*¹

    Harvard University, Harvard Stem Cell Institute

    A strong understanding of distinct gene components and the ability to retrieve relevant information from gene databases are necessary to answer a diverse set of biological questions. However, often...

    https://qubeshub.org/publications/3672/?v=1

12. Inquiry-based hypothesis testing using phylogenetic trees in MEGA

    17 Jun 2021 | Teaching Materials | Contributor(s):

    By Kristin Hultgren

    Seattle University

    A key learning objective in biology is applying bioinformatics tools to test a real-life question. These inquiry-based modules have students assemble and align data, and construct simple...

    https://qubeshub.org/publications/2379/?v=1

13. Introduction to nucleotide sequence analysis and protein modeling in MEGA and PyMol using coronavirus SARS-CoV-2

    03 Apr 2020 | Teaching Materials | Contributor(s):

    By Maria Shumskaya¹, Nicholas Lorusso²

    1. Kean University 2. University of North Texas at Dallas

    Introduction into computational approaches in phylogeny and protein modeling based on coronavirus SARS-CoV-2 (caused COVID-19 pandemic). Two self-guided tutorials for standard lab classes of 2.5...

    https://qubeshub.org/publications/1796/?v=1

14. Introduction to nucleotide sequence analysis and protein modeling in MEGA and PyMol using coronavirus SARS-CoV-2

    18 Jul 2020 | Teaching Materials | Contributor(s):

    By Maria Shumskaya¹, Nicholas Lorusso²

    1. Kean University 2. University of North Texas at Dallas

    Introduction into computational approaches in phylogeny and protein modeling based on coronavirus SARS-CoV-2 (caused COVID-19 pandemic). Two self-guided tutorials for standard lab classes of 2.5...

    https://qubeshub.org/publications/1796/?v=2

15. Introduction to nucleotide sequence analysis and protein modeling in MEGA and PyMol using coronavirus SARS-CoV-2

    03 Feb 2022 | Teaching Materials | Contributor(s):

    By Maria Shumskaya¹, Christopher Zambell¹, Nicholas Lorusso²

    1. Kean University 2. University of North Texas at Dallas

    Introduction into computational approaches in phylogeny and protein modeling based on coronavirus SARS-CoV-2 (caused COVID-19 pandemic). Two self-guided tutorials for standard lab classes of 2.5...

    https://qubeshub.org/publications/1796/?v=3

16. Introductory Video and worksheets on Module 1 and 2 on "Sequence Similarity: An inquiry based and under the hood..."

    31 May 2021 | Teaching Materials | Contributor(s):

    By Alice Tarun

    St. Lawrence University

    The video walks the students to complete Module 1 and 2 on Sequence Similarly and Alignment adapted from Tapprich (2019) and Hudson Alpha that teaches these modules within the context of the...

    https://qubeshub.org/publications/2394/?v=1

17. NCBI Overview

    11 Apr 2018 | Teaching Materials | Contributor(s):

    By Laura Harris

    Davenport University

    An overview of some of the databases within NCBI and how to get FASTA sequences.

    https://qubeshub.org/publications/464/?v=1

18. PPS

    07 May 2016 | Teaching Materials | Contributor(s):

    By Sam S Donovan

    University of Pittsburgh

    I guess this is required

    https://qubeshub.org/publications/10/?v=1

19. RNAseq data analysis using Galaxy

    13 Nov 2017 | Teaching Materials | Contributor(s):

    By Matthew Escobar¹, Sam S Donovan², Irina Makarevitch³, Bill Morgan⁴, Sabrina Robertson⁵

    1. California State University San Marcos 2. University of Pittsburgh 3. Hamline University 4. The College of Wooster 5. North Carolina State University

    This is a bioinformatics exercise intended for use in a computer lab setting with life science majors.

    https://qubeshub.org/publications/118/?v=3

20. RNAseq data analysis using Galaxy

    02 Jul 2021 | Teaching Materials | Contributor(s):

    By Matthew Escobar¹, Sam S Donovan², Irina Makarevitch³, Bill Morgan⁴, Sabrina Robertson⁵

    1. California State University San Marcos 2. University of Pittsburgh 3. Hamline University 4. The College of Wooster 5. North Carolina State University

    This is a bioinformatics exercise intended for use in a computer lab setting with life science majors.

    https://qubeshub.org/publications/118/?v=4