All Categories (1-20 of 23)

1. Colon Cancer: A Case of Genetic Bad Luck

   15 Mar 2023 | Teaching Materials | Contributor(s):

   By Anne M. Casper

   Eastern Michigan University

   Case study developed for an introductory genetics class published in the National Center for Case Study Teaching in Science

   https://qubeshub.org/publications/992/?v=2

2. How to Find a Gene: Retrieving Information From Gene Databases

   23 Feb 2023 | Teaching Materials | Contributor(s):

   By Ah Rume Julie Park†¹, Maitreyi Upadhyay†¹, William J. Anderson¹, Amie L. Holmes*¹

   Harvard University, Harvard Stem Cell Institute

   A strong understanding of distinct gene components and the ability to retrieve relevant information from gene databases are necessary to answer a diverse set of biological questions. However, often...

   https://qubeshub.org/publications/3672/?v=1

3. Introduction to nucleotide sequence analysis and protein modeling in MEGA and PyMol using coronavirus SARS-CoV-2

   03 Feb 2022 | Teaching Materials | Contributor(s):

   By Maria Shumskaya¹, Christopher Zambell¹, Nicholas Lorusso²

   1. Kean University 2. University of North Texas at Dallas

   Introduction into computational approaches in phylogeny and protein modeling based on coronavirus SARS-CoV-2 (caused COVID-19 pandemic). Two self-guided tutorials for standard lab classes of 2.5...

   https://qubeshub.org/publications/1796/?v=3

4. RNAseq data analysis using Galaxy

   02 Jul 2021 | Teaching Materials | Contributor(s):

   By Matthew Escobar¹, Sam S Donovan², Irina Makarevitch³, Bill Morgan⁴, Sabrina Robertson⁵

   1. California State University San Marcos 2. University of Pittsburgh 3. Hamline University 4. The College of Wooster 5. North Carolina State University

   This is a bioinformatics exercise intended for use in a computer lab setting with life science majors.

   https://qubeshub.org/publications/118/?v=4

5. Inquiry-based hypothesis testing using phylogenetic trees in MEGA

   17 Jun 2021 | Teaching Materials | Contributor(s):

   By Kristin Hultgren

   Seattle University

   A key learning objective in biology is applying bioinformatics tools to test a real-life question. These inquiry-based modules have students assemble and align data, and construct simple...

   https://qubeshub.org/publications/2379/?v=1

6. Sequence Similarity: Introducing Biological Databases to Community College Biology Students

   01 Jun 2021 | Teaching Materials | Contributor(s):

   By Jennifer Katcher

   This laboratory module, published on CourseSource, leads introductory biology students in the exploration of a basic set of bioinformatics concepts and tools.

   https://qubeshub.org/publications/2407/?v=1

7. Developing a phylogram from computational resources.

   01 Jun 2021 | Teaching Materials | Contributor(s):

   By Melanie Lenahan¹, Shea Cinquemani¹

   Raritan Valley Community College

   This laboratory module, published on CourseSource, leads introductory biology students in the exploration of a basic set of bioinformatics concepts and tools.

   https://qubeshub.org/publications/2404/?v=1

8. Introductory Video and worksheets on Module 1 and 2 on "Sequence Similarity: An inquiry based and under the hood..."

   31 May 2021 | Teaching Materials | Contributor(s):

   By Alice Tarun

   St. Lawrence University

   The video walks the students to complete Module 1 and 2 on Sequence Similarly and Alignment adapted from Tapprich (2019) and Hudson Alpha that teaches these modules within the context of the...

   https://qubeshub.org/publications/2394/?v=1

9. Introduction to nucleotide sequence analysis and protein modeling in MEGA and PyMol using coronavirus SARS-CoV-2

   18 Jul 2020 | Teaching Materials | Contributor(s):

   By Maria Shumskaya¹, Nicholas Lorusso²

   1. Kean University 2. University of North Texas at Dallas

   Introduction into computational approaches in phylogeny and protein modeling based on coronavirus SARS-CoV-2 (caused COVID-19 pandemic). Two self-guided tutorials for standard lab classes of 2.5...

   https://qubeshub.org/publications/1796/?v=2

10. Introduction to nucleotide sequence analysis and protein modeling in MEGA and PyMol using coronavirus SARS-CoV-2

    03 Apr 2020 | Teaching Materials | Contributor(s):

    By Maria Shumskaya¹, Nicholas Lorusso²

    1. Kean University 2. University of North Texas at Dallas

    Introduction into computational approaches in phylogeny and protein modeling based on coronavirus SARS-CoV-2 (caused COVID-19 pandemic). Two self-guided tutorials for standard lab classes of 2.5...

    https://qubeshub.org/publications/1796/?v=1

11. Bioinformatics: Investigating Sequence Similarity - A Plant Biology Approach

    29 May 2019 | Teaching Materials | Contributor(s):

    By Ami Erickson

    This laboratory module is a modification of the original published on CourseSource with a focus on plant biology. In the final activity, students conduct a BLAST to compare histone protein...

    https://qubeshub.org/publications/1247/?v=1

12. Sequence Similarity Resource Adaptation: Exploring Ebola Virus

    16 May 2019 | Teaching Materials | Contributor(s):

    By William Tapprich

    University of Nebraska-Omaha

    This adaptation of the sequence similarity resource provides biology students with a basic set of bioinformatics concepts and tools. These concepts and tools are used to explore relationships...

    https://qubeshub.org/publications/1219/?v=1

13. Sequence Similarity: An inquiry based and "under the hood" approach for incorporating molecular sequence alignment in introductory undergraduate biology courses

    02 May 2019 | Teaching Materials | Contributor(s):

    By Adam Kleinschmit¹, Benita Brink¹, Steven Roof², Carlos Christopher Goller³, Sabrina Robertson³

    1. Adams State University 2. Fairmont State University 3. North Carolina State University

    This laboratory module, published on CourseSource, leads introductory biology students in the exploration of a basic set of bioinformatics concepts and tools.

    https://qubeshub.org/publications/56/?v=5

14. Colon Cancer: A Case of Genetic Bad Luck

    03 Jan 2019 | Teaching Materials | Contributor(s):

    By Anne M. Casper

    Eastern Michigan University

    Case study developed for an introductory genetics class published in the National Center for Case Study Teaching in Science

    https://qubeshub.org/publications/992/?v=1

15. Bioinformatics: An Interactive Introduction to NCBI

    03 Jan 2019 | Teaching Materials | Contributor(s):

    By Seth Bordenstein

    Marine Biological Laboratory

    Modules showing how the NCBI database classifies and organizes information on DNA sequences, evolutionary relationships, and scientific publications. And a module working to identify a nucleotide...

    https://qubeshub.org/publications/989/?v=1

16. Bioinformatics - Investigating Sequence Similarity

    04 Dec 2018 | Teaching Materials | Contributor(s):

    By Adam Kleinschmit¹, Benita Brink¹, Steven Roof², Carlos Christopher Goller³, Sabrina Robertson³

    1. Adams State University 2. Fairmont State University 3. North Carolina State University

    This laboratory module, leads introductory biology students in the exploration of a basic set of bioinformatics concepts and tools.

    https://qubeshub.org/publications/56/?v=4

17. NCBI Overview

    11 Apr 2018 | Teaching Materials | Contributor(s):

    By Laura Harris

    Davenport University

    An overview of some of the databases within NCBI and how to get FASTA sequences.

    https://qubeshub.org/publications/464/?v=1

18. RNAseq data analysis using Galaxy

    13 Nov 2017 | Teaching Materials | Contributor(s):

    By Matthew Escobar¹, Sam S Donovan², Irina Makarevitch³, Bill Morgan⁴, Sabrina Robertson⁵

    1. California State University San Marcos 2. University of Pittsburgh 3. Hamline University 4. The College of Wooster 5. North Carolina State University

    This is a bioinformatics exercise intended for use in a computer lab setting with life science majors.

    https://qubeshub.org/publications/118/?v=3

19. Bioinformatics - Investigating Sequence Similarity

    05 Jul 2017 | Teaching Materials | Contributor(s):

    By Adam Kleinschmit¹, Benita Brink¹, Steven Roof², Komal Vig³, Carlos Christopher Goller⁴, Sabrina Robertson⁵

    1. Adams State University 2. Hampshire College 3. Alabama State University 4. North Carolina State University 5. NC State

    This laboratory module, leads introductory biology students in the exploration of a basic set of bioinformatics concepts and tools.

    https://qubeshub.org/publications/56/?v=3

20. Bioinformatics - Investigating Sequence Similarity

    05 Jun 2017 | Teaching Materials | Contributor(s):

    By Adam Kleinschmit¹, Benita Brink¹, Steven Roof², Komal Vig³

    1. Adams State University 2. Hampshire College 3. Alabama State University

    This laboratory module, leads introductory biology students in the exploration of a basic set of bioinformatics concepts and tools.

    https://qubeshub.org/publications/56/?v=2