You are here: Home / Tags / NIBLSE / All Categories

Tags: NIBLSE

More tags

All Categories (61-80 of 85)

  1. Using DNA Subway to Analyze Sequence Relationships

    28 May 2018 | Teaching Materials | Contributor(s):

    By Jason Williams1, Ray A. Enke2, Oliver Hyman2, Emily Lescak3, Sam S Donovan4, William Tapprich5, Elizabeth F Ryder6

    1. DNA Learning Center 2. The Department of Biology, James Madison University; The Center for Genome & Metagenome Studies, James Madison University 3. University of Alaska 4. University of Pittsburgh 5. University of Nebraska-Omaha 6. Worcester Polytechnic Institute

    This is a bioinformatics exercise using the DNA Subway Blue Line, a user-friendly pipeline of bioinformatics tools, to analyze a collection of mosquito DNA bar-code sequences.

    https://qubeshub.org/publications/165/?v=2

  2. Intro to DNA Barcoding

    28 May 2018 | Teaching Materials | Contributor(s):

    By Oliver Hyman1, Andrea Pesce2, Elizabeth Doyle2, Ray A Enke1

    1. The Department of Biology, James Madison University; The Center for Genome & Metagenome Studies, James Madison University 2. James Madison University

    This is a classroom tested introductory lesson & activity to introduce DNA Barcoding and DNA Subway Blue Line. It is for novices and will fit into a 30-45 min lecture or lab class period.

    https://qubeshub.org/publications/600/?v=1

  3. Intro to DNA Subway Blue Line

    28 May 2018 | Teaching Materials | Contributor(s):

    By Oliver Hyman1, Andrea Pesce2, Elizabeth Doyle2, Ray A Enke1

    1. The Department of Biology, James Madison University; The Center for Genome & Metagenome Studies, James Madison University 2. James Madison University

    This is a classroom tested introductory lesson & activity to introduce DNA Barcoding and DNA Subway Blue Line. It is for novices and will fit into a 1 hr 50 min lecture or lab class period.

    https://qubeshub.org/publications/599/?v=1

  4. Development of the NIBLSE Learning Resource Collection and Incubators

    16 Mar 2018 | Teaching Materials | Contributor(s):

    By Bill Morgan1, Sam S Donovan2, Hayley Orndorf2, Sabrina Robertson3, Elizabeth Ryder4, Michael Sierk5, Anne Rosenwald6, Liz Dinsdale7, Eric Triplett8, Mark A. Pauley9, William Tapprich10

    1. The College of Wooster 2. University of Pittsburgh 3. North Carolina State University 4. Worcester Polytechnic Institute 5. Saint Vincent College 6. Georgetown University 7. San Diego State University 8. University of Florida 9. University of Nebraska at Omaha 10. University of Nebraska - Omaha

    Talk on the NIBLSE Resource Collection and Incubators given at several professional development confernces

    https://qubeshub.org/publications/413/?v=1

  5. Incubators: A community based model for improving the usability of bioinformatics learning resources

    19 Jan 2018 | Teaching Materials | Contributor(s):

    By Hayley Orndorf1, Bill Morgan2, Neal Grandgenett3, Mark A. Pauley3, Elizabeth Ryder4, Michael Sierk5, Robin Wright6, Anne Rosenwald7, Liz Dinsdale8, Eric Triplett9, Sam S Donovan1

    1. University of Pittsburgh 2. The College of Wooster 3. University of Nebraska at Omaha 4. Worcester Polytechnic Institute 5. Saint Vincent College 6. University of Minnesota 7. Georgetown University 8. San Diego State University 9. University of Florida

    Poster on Incubators, a NIBLSE and QUBES collaboration presented at Great Lakes Bioinformatics Conference - Chicago, IL

    https://qubeshub.org/publications/326/?v=1

  6. RNAseq data analysis using Galaxy

    13 Nov 2017 | Teaching Materials | Contributor(s):

    By Matthew Escobar1, Sam S Donovan2, Irina Makarevitch3, Bill Morgan4, Sabrina Robertson5

    1. California State University San Marcos 2. University of Pittsburgh 3. Hamline University 4. The College of Wooster 5. North Carolina State University

    This is a bioinformatics exercise intended for use in a computer lab setting with life science majors.

    https://qubeshub.org/publications/118/?v=3

  7. DNA Subway Learning Resources

    18 Oct 2017 | Teaching Materials | Contributor(s):

    By Jason Williams

    DNA Learning Center

    DNA Subway is a NIBLSE Recommended resource. This is a collection of learning resources associated with DNA Subway.

    https://qubeshub.org/publications/164/?v=2

  8. Using DNA Subway to Analyze Sequence Relationships

    18 Oct 2017 | Teaching Materials | Contributor(s):

    By Jason Williams

    DNA Learning Center

    This is a bioinformatics exercise using DNA Subway

    https://qubeshub.org/publications/165/?v=1

  9. Bioinformatics: CpG Islands

    17 Oct 2017 | Teaching Materials | Contributor(s):

    By Edward Himelblau

    California Polytechnic State University

    This is an introductory bioinformatics exercise intended for use in a genetics course.

    https://qubeshub.org/publications/147/?v=1

  10. DNA Subway Learning Resources

    16 Oct 2017 | Teaching Materials | Contributor(s):

    By Jason Williams

    Cold Spring Harbor Laboratory

    DNA Subway is a NIBLSE Recommended resource. This is a collection of learning resources associated with DNA Subway.

    https://qubeshub.org/publications/164/?v=1

  11. RNAseq data analysis using Galaxy

    01 Aug 2017 | Teaching Materials | Contributor(s):

    By Matthew Escobar

    California State University - San Marcos

    This is a bioinformatics exercise intended for use in a computer lab setting with life science majors.

    https://qubeshub.org/publications/118/?v=2

  12. Bioinformatics - Investigating Sequence Similarity

    05 Jul 2017 | Teaching Materials | Contributor(s):

    By Adam Kleinschmit1, Benita Brink1, Steven Roof2, Komal Vig3, Carlos Christopher Goller4, Sabrina Robertson5

    1. Adams State University 2. Hampshire College 3. Alabama State University 4. North Carolina State University 5. NC State

    This laboratory module, leads introductory biology students in the exploration of a basic set of bioinformatics concepts and tools.

    https://qubeshub.org/publications/56/?v=3

  13. RNAseq data analysis using Galaxy

    03 Jul 2017 | Teaching Materials | Contributor(s):

    By Matthew Escobar

    California State University - San Marcos

    This is a bioinformatics exercise intended for use in a computer lab setting with life science majors.

    https://qubeshub.org/publications/118/?v=1

  14. Wolf Sheep Predation Simulation Exercise

    05 Jun 2017 | Teaching Materials | Contributor(s):

    By Liz Ryder

    Worcester Polytechnic Institute

    This resource is an exercise to introduce students to agent-based modeling of biological systems through working with a simple existing model.

    https://qubeshub.org/publications/29/?v=2

  15. Bioinformatics - Investigating Sequence Similarity

    05 Jun 2017 | Teaching Materials | Contributor(s):

    By Adam Kleinschmit1, Benita Brink1, Steven Roof2, Komal Vig3

    1. Adams State University 2. Hampshire College 3. Alabama State University

    This laboratory module, leads introductory biology students in the exploration of a basic set of bioinformatics concepts and tools.

    https://qubeshub.org/publications/56/?v=2

  16. Exploring HIV Evolution

    05 Jun 2017 | Teaching Materials | Contributor(s):

    By Sam S Donovan1, Tony Weisstein2

    1. University of Pittsburgh 2. Truman State University

    In this activity you will study aspects of sequence evolution by working with a set of HIV sequence data from 15 different subjects (Markham, et al., 1998). You will first learn about the dataset,...

    https://qubeshub.org/publications/24/?v=2

  17. Needleman - Wunsch Algorithm Exercise

    05 Jun 2017 | Teaching Materials | Contributor(s):

    By Michael Sierk

    Saint Vincent College

    This exercise is used in a sophomore-junior level bioinformatics course. The algorithm is introduced to the students who then complete the exercise.

    https://qubeshub.org/publications/28/?v=3

  18. RNA-seq Analysis

    05 Jun 2017 | Teaching Materials | Contributor(s):

    By Bill Morgan1, Matthew Reeder2

    1. The College of Wooster 2. Ohio State University

    In this computer lab module, students learn how to process an RNA-seq data set to identify differentially expressed genes (DEGs). The samples for this data set were collected from yeast cells...

    https://qubeshub.org/publications/27/?v=2

  19. Bioinformatics - Investigating Sequence Similarity

    31 Jan 2017 | Teaching Materials | Contributor(s):

    By Adam Kleinschmit1, Benita Brink1, Steven Roof2, Komal Vig3

    1. Adams State University 2. Hampshire College 3. Alabama State University

    This laboratory module, leads introductory biology students in the exploration of a basic set of bioinformatics concepts and tools.

    https://qubeshub.org/publications/56/?v=1

  20. Incubators: A community based model for improving the usability of bioinformatics learning resources

    out of 5 stars 

    07 Nov 2016 | | Contributor(s):: Hayley Orndorf, Bill Morgan, Neal Grandgenett, Mark Pauley, Liz Ryder, Michael Sierk, Robin Wright, Anne Rosenwald, Liz Dinsdale, Eric Triplett, Sam S Donovan

    This resource has been updated - find the current version here: https://qubeshub.org/publications/326There are a variety of barriers to faculty participation in scholarly approaches to teaching. Primary among these are the challenges undergraduate faculty face in finding and...

Close

Home

Search