QUBES - Tags: Resources @ QUBES

out of 5 stars

24 Jan 2016 |

GENI-ACT allows collaborative genome annotation. Researchers or students can collectively suggest changes to an existing genome with supporting evidence. Changes can be ported back to genbank by exporting to a sequin file format. GENI-ACT also has ported the education components from IMG-ACT....

OpenRefine

out of 5 stars

18 Jan 2016 |

OpenRefine (formerly Google Refine) is a powerful tool for working with messy data: cleaning it; transforming it from one format into another; and extending it with web services and external data.

DFIELD

out of 5 stars

19 Oct 2015 |

DFIELD is an interactive tool that graphs a direction field for a given differential equation.

Populus: Simulations of Population Biology

out of 5 stars

09 Jan 2015 | | Contributor(s):: D. N. Alstad

This resource has been updated - find the current version here: https://qubeshub.org/publications/352The Populus software contains a set of simulations that we use to teach population biology and evolutionary ecology at the University of Minnesota. Simulation models may be chosen from a...

R Commander

out of 5 stars

04 Sep 2015 | | Contributor(s):: Drew LaMar

R provides a powerful and comprehensive system for analysing data and when used in conjunction with the R-commander (a graphical user interface, commonly known as Rcmdr) it also provides one that is easy and intuitive to use.

Augmented Reality Metabolic Pathways (ARMET)

out of 5 stars

25 Aug 2015 | | Contributor(s):: Eduardo Galembeck

This resource has been updated - find the current version here: https://qubeshub.org/qubesresources/publications/786The New Media Consortium (NMC) Horizon Project defines educational technology in a broad sense as tools and resources that are used to improve teaching, learning, and...

BactVsPhage

out of 5 stars

27 Jun 2015 | | Contributor(s):: Drew LaMar

Simulates basic models in theoretical ecology, as well as three models of bacteria/bacteriophage interactions.

FastQC

out of 5 stars

24 Jun 2015 |

A quality control tool for high throughput sequence data.

Mesquite

out of 5 stars

18 Jun 2015 |

A modular system for evolutionary analysis

ImageJ

out of 5 stars

16 Jun 2015 |

Image processing and analysis in Java.

Ka-me: Voronoi Image Analyzer 1.0

out of 5 stars

15 Jun 2015 | | Contributor(s):: John R Jungck

Ka-me is a Voronoi image analyzer that allows users to analyze any image with a convex polygonal tessellation or any spatial point distribution by fitting Voronoi polygons and their dual, Delaunay triangulations, to the pattern.

BioRadiant

out of 5 stars

19 May 2015 | | Contributor(s):: Drew LaMar

Interactive statistics package using R and Shiny.

Statistical Power for One-Sample t-Test

out of 5 stars

18 May 2015 | | Contributor(s):: Drew LaMar

Interactive visualization of statistical power for a one-sample t-test.

PPLANE

out of 5 stars

02 Apr 2015 |

PPLANE is a tool for Phase Plane Analysis of a System of Differential Equations of the form: x' = dx/dt = f(x,y), y' = dy/dt = g(x,y).

XPPAUT

out of 5 stars

31 Mar 2015 |

XPPAUT is a general numerical tool for simulating, animating, and analyzing dynamical systems.

Java Applets for Power and Sample Size

out of 5 stars

10 Mar 2015 | | Contributor(s):: Russell Lenth

This resource has been updated - find the current version here: https://qubeshub.org/qubesresources/publications/899From the website:This software is intended to be useful in planning statistical studies. It is not intended to be used for analysis of data that have already been...

QtOctave

out of 5 stars

19 Feb 2015 |

QtOctave is an open source GUI front-end application for GNU Octave.

IONTW

out of 5 stars

28 Jan 2015 | | Contributor(s):: Drew LaMar

Simulates both discrete and continuous time agent-based models of infectious disease dynamics on networks.

RStudio IDE for R

out of 5 stars

22 Jan 2015 |

RStudio is a GUI for R, the statistical programming language.