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Tags: Resources @ QUBES - Software

All Categories (1-20 of 43)

  1. ABO Blood Group Frequencies

    14 Jan 2015 | | Contributor(s):: John R. Jungck, Jennifer A. Spangenberg

    This resource has been updated - find the current version here: https://qubeshub.org/qubesresources/publications/756An Excel workbook in which students can calculate blood type frequencies through different approaches (Hardy-Weinberg, quadratic formula, and the EM algorithm).  The...

  2. Augmented Reality Metabolic Pathways (ARMET)

    25 Aug 2015 | | Contributor(s):: Eduardo Galembeck

    This resource has been updated - find the current version here: https://qubeshub.org/qubesresources/publications/786The New Media Consortium (NMC) Horizon Project defines educational technology in a broad sense as tools and resources that are used to improve teaching, learning, and...

  3. Avida-ED

    06 Oct 2017 | | Contributor(s):: Robert T Pennock, Diane Blackwood

         This resource has been updated - find the current version here: https://qubeshub.org/qubesresources/publications/874Avida-ED is an award-winning educational application developed at Michigan State University...

  4. BactVsPhage

    27 Jun 2015 | | Contributor(s):: Drew LaMar

    Simulates basic models in theoretical ecology, as well as three models of bacteria/bacteriophage interactions.

  5. BioRadiant

    19 May 2015 | | Contributor(s):: Drew LaMar

    Interactive statistics package using R and Shiny.

  6. Birthday Problem and Class Phenotypic Probabilities

    13 Jan 2015 | | Contributor(s):: John R. Jungck, Annelise L. Myers, Jennifer A. Spangenberg

    This resource has been updated - find the current version here: https://qubeshub.org/qubesresources/publications/774An Excel sheet that allows students to input class data about various phenotypic features and then calculates the probability of other people having the same...

  7. Cats Teach Stats Binomial Test

    27 Jun 2019 | | Contributor(s):: Jenny Hazlehurst, Suann Yang, Darcy Taniguchi

    Fight stats anxiety! Students collect binary data from cute animal videos and analyze the data using a binomial test

  8. Classical Genetics Simulator

    12 Jan 2015 | | Contributor(s):: Ben Adamczyk

    Students manage virtual fly populations to determine the mode of inheritance for various traits in different populations. Students seek solutions using probabilities and testing the validity of their assumptions using chi-squared analysis. 

  9. COPASI

    10 Feb 2015 |

    COPASI is a software application for simulation and analysis of biochemical networks and their dynamics.

  10. Cultivating Your Growth Mindset

    22 Jun 2018 | | Contributor(s):: Kika Tuff, Jeremy M Wojdak, Arietta Fleming-Davies

    Learn what a growth mindset is and how it improves learning

  11. DFIELD

    19 Oct 2015 |

    DFIELD is an interactive tool that graphs a direction field for a given differential equation.

  12. Ebola Model

    26 Apr 2019 | | Contributor(s):: Michael James, Lauren Mayer, Keely Copperthite

    Simple agent based SIR model of Ebola epidemics.

  13. FastQC

    24 Jun 2015 |

    A quality control tool for high throughput sequence data.

  14. Gene Machine: The Lac Operon

    08 Sep 2018 |

    Explore the effects of mutations within the lac operon by adding or removing genes from the DNA.

  15. Genetic Drift Simulation - NetLogo

    22 Jun 2016 | | Contributor(s):: Tony Weisstein

    This model simulates genetic drift in a population.  The user can control the population size, whether the population is subdivided into separate local populations, and the amount of gene flow (if any) between local populations.  Phenotype frequency in each subpopulation is plotted as a...

  16. GENI-ACT

    24 Jan 2016 |

    GENI-ACT allows collaborative genome annotation. Researchers or students can collectively suggest changes to an existing genome with supporting evidence. Changes can be ported back to genbank by exporting to a sequin file format. GENI-ACT also has ported the education components from IMG-ACT....

  17. ImageJ

    16 Jun 2015 |

    Image processing and analysis in Java.

  18. Investigating Trade-offs among Mammal Traits

    06 Jun 2018 | | Contributor(s):: Jackie Matthes

    This app draws on a large species-level dataset with metabolic, life history, and ecological traits of most living and recently extinct mammal species. Users can select and plot traits, fit linear models to the data, and query displayed datapoints.

  19. IONTW

    28 Jan 2015 | | Contributor(s):: Drew LaMar

    Simulates both discrete and continuous time agent-based models of infectious disease dynamics on networks.

  20. IPMpack: an R package for Integral Projection Models

    19 Jan 2015 | | Contributor(s):: C. Jessica E. Metcalf, Sean M. McMahon, Roberto Salguero-Gómez, Eelke Jongejans, Cory Merow

    This resource has been updated - find the current version here: https://qubeshub.org/qubesresources/publications/779IPMpack is an R package (R Development Core Team 2013) that allows users to build and analyse Integral Projection Models. An IPM is a demographic tool to explore the...