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3D breast cancer tissue reconstruction
17 Sep 2018 | Teaching Materials | Contributor(s):
By Jeremy M Wojdak1, Kerri-Ann Norton2
1. Radford University 2. Johns Hopkins University
This module allows students to follow a researcher as she discovers new features of breast cancer tissue architecture, using 3D reconstructions of histological specimens.
24 Aug 2018 | Teaching Materials | Contributor(s):
11 Sep 2018 | Teaching Materials | Contributor(s):
By John R Jungck1, Jennifer Spangenberg2, Noppadon Khiripet3, Rawin Viruchpinta3, Jutarat Maneewattanapluk3
1. Interdisciplinary Science Learning Center at the University of Delaware 2. Beloit College 3. National Electronics and Computer Technology Center
3D FractaL-Tree allows scientists to collect data from actual specimens in the field or laboratory, insert these measurements into a spatially explicit L-system package, and then visually compare...
A Curious Display
28 Oct 2019 | Teaching Materials | Contributor(s):
By Margaret Waterman1, Brandon Call, Sandi Connelly2, Kristin Jenkins3, Sam Catherine Johnston4, Vedham Karpakakunjaram5, Viet Le6, Hayley Orndorf7, Melissa Skyer8, Barbara Spiecker9
1. Southeast Missouri State University 2. Rochester Institute Of Technology 3. BioQUEST 4. CAST Inc. 5. Montgomery College 6. Rochester Institute of Technology 7. University of Pittsburgh 8. National Technical Institute for the Deaf at Rochester Institute of Technology 9. Oregon State University
Case study on genetically modified organisms
A Fun Introductory Command Line Exercise: Next Generation Sequencing Quality Analysis with Emoji!
07 Jun 2019 | Teaching Materials | Contributor(s):
By Rachael St. Jacques1, Max Maza1, Sabrina Robertson2, Guoqing Lu3, Andrew Lonsdale4, Ray A Enke5
1. Department of Biology, James Madison University 2. Department of Psychology & Neuroscience, University of North Carolina at Chapel Hill 3. Department of Biology and School of Interdisciplinary Informatics, University of Nebraska Omaha 4. ARC Centre of Excellence in Plant Cell Walls, Melbourne University 5. James Madison University
This resource is a fun computer-based intro to command line programming. The activity takes FASTQ NGS data files and runs a fun program called FASTQE.
28 Feb 2019 | Teaching Materials | Contributor(s):
A Growing Concern: Sustaining Soil Resources through Local Decision Making
11 Jan 2018 | Teaching Materials | Contributor(s):
By Sarah Fortner1, Martha Murphy2, Hannah Scherer3
1. Wittenberg University 2. Santa Rosa Junior College 3. Virginia Tech
This module addresses this need by providing students the opportunity to examine the differences between intensively managed agricultural landscapes (e.g. grazelands, conventional tillage) and...
A Hands-on Introduction to Hidden Markov Models
04 Jan 2019 | Teaching Materials | Contributor(s):
By Tony Weisstein1, Elena Gracheva2, Zane Goodwin2, Zongtai Qi2, Wilson Leung2, Christopher D. Shaffer2, Sarah C.R. Elgin2
1. Truman State University 2. Washington University in St. Louis
A lesson in which students will understand the basic structure of an HMM, the types of data used in ab initio gene prediction, and its consequent limitations.
A Pipeline in Paradise
03 Apr 2018 | Teaching Materials | Contributor(s):
By Victoria Schneider
I incorporated fracking into the case study instead of just focusing on building a pipeline, which allowed us to discuss fracking with this case study.
A Pipeline in Paradise, Part 1: Learning the Relevant Science
12 Sep 2018 | Teaching Materials | Contributor(s):
By Shannon N. Conley1, Kathryn De Ridder-Vignone1, Mary K. Handley1, Michael L. Deaton1
James Madison University
This case requires students to integrate information across the following five “knowledge domains” to develop a baseline understanding of the problem.
A Structured Inquiry Approach to Cotyledon Phenotyping
20 Dec 2018 | Teaching Materials | Contributor(s):
By Megan L Van Etten
Pennsylvania State University
In this lab, students will work with messy data to try to answer the question “How do plants inherit cotyledon color?”
27 Mar 2018 | Teaching Materials | Contributor(s):
By Lindsey Tuominen
Metropolitan State University
A Student's Guide to Tropical Marine Biology
09 Dec 2019 | Teaching Materials | Contributor(s):
By Karen Cangialosi
Keene State College
A Student's Guide to Tropical Marine Biology was curated and written entirely by students, and mostly edited by students at Keene State College that were enrolled in the course taught by Dr. Karen...
A Very Basic Tutorial for Performing Linear Mixed Effects Analyses: Tutorial 2
20 Oct 2018 | Teaching Materials | Contributor(s):
By Bodo Winter
University of California, Merced
The second of two tutorials that introduce you to linear and linear mixed models. This tutorial serves as a quick boot camp to jump-start your own analyses with linear mixed effects models.
ABO Blood Group Frequencies
By John R Jungck1, Jennifer A. Spangenberg2
1. Interdisciplinary Science Learning Center at the University of Delaware 2. Beloit College
An Excel workbook in which students can calculate blood type frequencies through different approaches (Hardy-Weinberg, quadratic formula, and the EM algorithm). The workbook shows the formulas used...
Adaptation of Investigating human impacts on stream ecology: locally and nationally
10 Jun 2019 | Teaching Materials | Contributor(s):
By Catherine Sughrue Etter
Cape Cod Community College
TIEE Module- How does nutrient pollution impact stream ecosystems locally and nationally?
Adaptation of Terrestrial Trophic Cascades & Population Structure to a Non-Major’s Ecology Course
21 Dec 2018 | Teaching Materials | Contributor(s):
By John Howard Starnes
Southcentral Kentucky Community and Technical College
In this activity, students will use data from natural parks to examine trophic cascades.
Adapted Value of Mistakes
10 May 2019 | Teaching Materials | Contributor(s):
By Sheela Vemu
Waubonsee Community College - Tenure Track
This module is adapted from BIOMAAP materials on the value of mistakes and application of growth mindset in a microbiology lab.
Adapting InTeGrate Materials for Online Courses
22 Aug 2018 | Teaching Materials | Contributor(s):
By Tara Holmberg
Northwestern Connecticut Community College
As part of my second mentoring of the InTeGrate FMN for QUBES, I chose to focus on my conversion of several resources to an online course format.
Additional Figures of the Day - Parasitology
30 May 2019 | Teaching Materials | Contributor(s):
By Elizabeth Hamman
These additional figures were used in a Parasitology course (juniors and seniors) at Radford University.