GCAT-SEEK Eukaryotic Genomics Workshop Manual
Developed by Dr. Vince Buonaccorsi at Juniata College, the GCAT-SEEK Eukaryotic Genomics Workshop Manual consists of seven chapters that cover genome assembly, gene annotations, and variant calling:
- Genome assembly I: Quality control with FastQC and Trimmomatic
- Genome assembly II: Assembly size estimation and k-mer graphs
- Genome assembly III: Assembly algorithms
- Genome annotation with Maker I: Overview and repeat finding
- Genome annotation with Maker II: Whole genome analysis
- Whole genome annotation: Miscellaneous methods
- SNP calling and interpretation
CourseSource Publication
Buonaccorsi, V.P., Hamlin, D., Fowler, B., Sullivan, C., and Sickler, A. 2017. An Introduction to Eukaryotic Genome Analysis in Non-model Species for Undergraduates: A tutorial from the Genome Consortium for Active Teaching. CourseSource. https://doi.org/10.24918/cs.2017.1
