Overview

Integrating Biological Big Data Research into Student Training & Education

 

Goals

  • Educate faculty members on using videos to teach computational skills
  • Support faculty in developing and implementing their own video tutorials for biological big data 

Final Products

Eight videos developed by Hong Qin about using Java at the University of Tennessee Chattanooga
genetics, videos, Evolution, QUBES, faculty mentoring networks, Resources @ HHMI - BioInteractive, case study, java, behavior, organismal biology, versioning, bioinformatics, metrics, Biodiversity, Speciation, plants, genomics, data literacy, youtube, Stem cells, DNA, Audience level - Introductory UG - majors, phylogeny and classification, regeneration, planaria, trophic cascades, national parks, Book, Presentation, Teaching material, High School, Reference material, Abstract, Undergraduate, Conference material
172
10
0
04.16.2018
Java, UTC, Fall 2017
186
32
0
04.16.2018
211
37
0
04.16.2018
CPSC1100, UTC, Fall 2017
175
33
0
04.16.2018
resources, mathematics, education, differential equations, modeling, simulation, videos, module, sustainability, QUBES, professional development, data, morphology, biology, java, phylogeny, laboratory, epidemics, disease, bioinformatics, community, applied mathematics, Resources @ SIMIODE, retinal surgery, insect colony, LSD, m&m, parameter estimation, plants, genomics, collaboration, environmental science, in-class activity, project, proceedings, youtube, geology, soil science, Resources @ InTeGrate, molecular analysis, Java String, introductory, Article, Lab, Teaching material, Lecture, Reference material, Undergraduate, Publication, Extended Project
168
29
0
04.16.2018
CPSC1100 UTC, Spring 2017. Exercises are modified from Big JAVA.
videos, module, phylogenetics, ecology, Resources @ HHMI - BioInteractive, cell biology, java, community, molecular genetics, plants, genomics, youtube, diversity, Scientific Process, Teaching material, High School, Undergraduate
183
34
0
04.16.2018
BigJava Chapter 6, UTC CPSC1100 Fall 2017. Debug flag usage is shown.
167
34
0
04.16.2018
BigJava Chapter 6, UTC, CPSC1100 Fall 2017
Resources @ ESA - TIEE, java, bioinformatics, Disease ecology, genomics, FMN, youtube, DIG, human ecology and behavior, bacterial infections, spatial and temporal spread of disease, Geographic Information System (GIS), Big Java, investment case, introductory, Lab, Online course, Teaching material, Lecture, Undergraduate, Advanced, More than 1 hour
162
30
0
04.16.2018
CPSC1100 Fall 2017, UTC. Big Java Chapter 4.
177
32
0
04.16.2018

UNR Bioinformatics Videos

Pedro Miura

Version: 1.0

Two videos developed by Pedro Miura about bioinformatics at UNR
149
9
0
04.13.2018

Northern Processing

Pedro Miura

Version: 1.0

Using photoshop and illustrator from tif file to make a figure
videos, bioinformatics, genomics, northern processing, photoshop, illustrator, Teaching material, Undergraduate
142
21
0
04.13.2018

Aging and Circular RNAs

Pedro Miura

Version: 1.0

A science FIT seminar presented to incoming freshmen at UNR
156
28
0
04.13.2018
Collection of videos developed by Barry Grant at UCSD for his course, BGGN-213
158
9
0
04.13.2018

Using Jetstream for Bioinformatics

Barry Grant

Version: 1.0

A pre-class screencast for UCSD’s Foundations of Bioinformatics course (BGGN-213).
145
21
0
04.13.2018

How do we do Bioinformatics?

Barry Grant

Version: 1.0

A description of the computational setup for “Foundations of Bioinformatics” (BGGN-213) See: http://thegrantlab.org/bggn213/
behavior, adaptation, bioinformatics, competition, genomics, Animals, youtube, screen cast, mating, insects, Teaching material, High School, Undergraduate
147
19
0
04.13.2018

What is Bioinformatics?

Barry Grant

Version: 1.0

This second screencast introduces bioinformatics, details major leaning goals & expectations of BGGN-213 and outlines the areas of bioinformatics covered in ...
156
31
0
04.13.2018

Foundations of Bioinformatics (BGGN-213)

Barry Grant

Version: 1.0

This first short screen-cast introduces “Foundations of Bioinformatics” (BGGN-213) course at UCSD and covers some pre-course logistics.
145
17
0
04.13.2018

Video Tutorials for Computational Genomics

Laura Harris

Version: 1.0

YouTube videos by Laura Harris on a variety of genomics and bioinformatics topics.
215
8
0
04.12.2018

How to Use BLASTP NCBI

Laura Harris

Version: 1.0

A walk through on how to find protein sequences and use BLASTP and PSI-BLAST in NCBI.
230
29
0
04.11.2018

ProteinPhysiochemistry

Laura Harris

Version: 1.0

How to determine physiochemical features of proteins using ExPasy Protpram, SOSUI server, and PSortB programs.
138
20
0
04.11.2018

LEAGSEA

Laura Harris

Version: 1.0

How to perform Leading Edge Analysis in Gene Set Enrichment Analysis by Broad Institute
139
21
0
04.11.2018

Using Phyre2

Laura Harris

Version: 1.0

How to use Phrye2 and 3DLigandSite to computationally predict protein and active site structure and binding partners (substrates/cofactors/coenzymes).
149
20
0
04.11.2018

NCBI Overview

Laura Harris

Version: 1.0

An overview of some of the databases within NCBI and how to get FASTA sequences.
147
20
0
04.11.2018

UniProt

Laura Harris

Version: 1.0

Brief description of UniProt and its databases and features
176
23
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04.10.2018

GSEAtheory

Laura Harris

Version: 1.0

Brief introduction to how gene set enrichment analysis works.
228
26
0
04.10.2018

Simple Heat Maps with Morpheus

Laura Harris

Version: 1.0

Learn how to load an Excel file of raw data into Morpheus and change between relative and global scales.
Excel, bioinformatics, genomics, youtube, morpheus, heat maps, Teaching material, Undergraduate
217
32
0
04.10.2018

What is bioinformatics?

Laura Harris

Version: 1.0

Short description of what bioinformatics is, it's potential applications, and what it is not.
153
22
0
04.10.2018
YouTube video on using statistical notation in Microsoft Word.
153
19
0
04.10.2018