Integrating Biological Big Data Research into Student Training & Education

 

Goals

  • Educate faculty members on using videos to teach computational skills
  • Support faculty in developing and implementing their own video tutorials for biological big data 

Final Products

Eight videos developed by Hong Qin about using Java at the University of Tennessee Chattanooga
videos, java, bioinformatics, genomics, youtube, Undergraduate, Audience Level
560
56
0
0
04.2018
videos, java, bioinformatics, genomics, youtube, random number generator, Undergraduate, Audience Level
533
111
0
0
04.2018
videos, java, bioinformatics, genomics, youtube, Java String, Undergraduate, Audience Level
613
123
0
0
04.2018
CPSC1100, UTC, Fall 2017
videos, java, bioinformatics, genomics, youtube, Undergraduate, Audience Level
514
108
0
0
04.2018
videos, java, bioinformatics, genomics, youtube, Java String, Undergraduate, Audience Level
531
104
0
0
04.2018
CPSC1100 UTC, Spring 2017. Exercises are modified from Big JAVA.
videos, java, genomics, youtube, Undergraduate, Audience Level
536
138
0
0
04.2018
BigJava Chapter 6, UTC CPSC1100 Fall 2017. Debug flag usage is shown.
videos, java, bioinformatics, genomics, youtube, Big Java, Undergraduate, Audience Level
555
119
0
0
04.2018
BigJava Chapter 6, UTC, CPSC1100 Fall 2017
java, bioinformatics, genomics, youtube, Big Java, investment case, Undergraduate, Audience Level
519
107
0
0
04.2018
CPSC1100 Fall 2017, UTC. Big Java Chapter 4.
videos, java, bioinformatics, genomics, youtube, Java String, Undergraduate, Audience Level
556
134
0
0
04.2018

UNR Bioinformatics Videos

Pedro Miura

Version: 1.0

Two videos developed by Pedro Miura about bioinformatics at UNR
videos, bioinformatics, genomics, youtube, Undergraduate, Audience Level
466
50
0
0
04.2018

Northern Processing

Pedro Miura

Version: 1.0

Using photoshop and illustrator from tif file to make a figure
videos, bioinformatics, genomics, northern processing, photoshop, illustrator, Undergraduate, Audience Level
442
87
0
0
04.2018

Aging and Circular RNAs

Pedro Miura

Version: 1.0

A science FIT seminar presented to incoming freshmen at UNR
videos, bioinformatics, RNA, aging, genomics, youtube, circular rna, Undergraduate, Audience Level
497
105
0
0
04.2018
Collection of videos developed by Barry Grant at UCSD for his course, BGGN-213
videos, bioinformatics, genomics, youtube, screen cast, Undergraduate, Audience Level
462
54
0
0
04.2018

Using Jetstream for Bioinformatics

Barry Grant

Version: 1.0

A pre-class screencast for UCSD’s Foundations of Bioinformatics course (BGGN-213).
videos, bioinformatics, genomics, youtube, screen cast, jetstream, Undergraduate, Audience Level
454
86
0
0
04.2018

How do we do Bioinformatics?

Barry Grant

Version: 1.0

A description of the computational setup for “Foundations of Bioinformatics” (BGGN-213) See: http://thegrantlab.org/bggn213/
bioinformatics, genomics, youtube, screen cast, Undergraduate, Audience Level
445
95
0
0
04.2018

What is Bioinformatics?

Barry Grant

Version: 1.0

This second screencast introduces bioinformatics, details major leaning goals & expectations of BGGN-213 and outlines the areas of bioinformatics covered in ...
videos, bioinformatics, genomics, youtube, screen cast, introductory bioinformatics, Undergraduate, Audience Level
482
101
0
0
04.2018

Foundations of Bioinformatics (BGGN-213)

Barry Grant

Version: 1.0

This first short screen-cast introduces “Foundations of Bioinformatics” (BGGN-213) course at UCSD and covers some pre-course logistics.
bioinformatics, genomics, youtube, screen cast, Undergraduate, Audience Level
495
93
0
0
04.2018

Video Tutorials for Computational Genomics

Laura Harris

Version: 1.0

YouTube videos by Laura Harris on a variety of genomics and bioinformatics topics.
videos, bioinformatics, genomics, fmn, youtube, Undergraduate, Audience Level
618
52
0
0
04.2018

How to Use BLASTP NCBI

Laura Harris

Version: 1.0

A walk through on how to find protein sequences and use BLASTP and PSI-BLAST in NCBI.
bioinformatics, proteins, genomics, NCBI, youtube, BLAST, BLASTP, PSI-BLAST, Undergraduate, Audience Level
725
124
0
1
04.2018

ProteinPhysiochemistry

Laura Harris

Version: 1.0

How to determine physiochemical features of proteins using ExPasy Protpram, SOSUI server, and PSortB programs.
videos, bioinformatics, proteins, genomics, youtube, protein physiochemistry, ExPasy Protpram, SOSUI server, PSortB, Undergraduate, Audience Level
424
120
0
0
04.2018

LEAGSEA

Laura Harris

Version: 1.0

How to perform Leading Edge Analysis in Gene Set Enrichment Analysis by Broad Institute
videos, bioinformatics, genomics, youtube, LEAGSEA, gene set enrichment, Leading Edge Analysis, Undergraduate, Audience Level
457
89
0
0
04.2018

Using Phyre2

Laura Harris

Version: 1.0

How to use Phrye2 and 3DLigandSite to computationally predict protein and active site structure and binding partners (substrates/cofactors/coenzymes).
videos, bioinformatics, proteins, genomics, youtube, phyre2, 3DLigandSite, Undergraduate, Audience Level
548
102
0
0
04.2018

NCBI Overview

Laura Harris

Version: 1.0

An overview of some of the databases within NCBI and how to get FASTA sequences.
videos, bioinformatics, FASTA, genomics, NCBI, youtube, Undergraduate, Audience Level
472
84
0
0
04.2018

UniProt

Laura Harris

Version: 1.0

Brief description of UniProt and its databases and features
videos, bioinformatics, genomics, youtube, uniprot, Undergraduate, Audience Level
556
91
0
0
04.2018

GSEAtheory

Laura Harris

Version: 1.0

Brief introduction to how gene set enrichment analysis works.
videos, bioinformatics, genomics, youtube, gsea, Undergraduate, Audience Level
640
115
0
0
04.2018

Simple Heat Maps with Morpheus

Laura Harris

Version: 1.0

Learn how to load an Excel file of raw data into Morpheus and change between relative and global scales.
Excel, bioinformatics, genomics, youtube, morpheus, heat maps, Undergraduate, Audience Level
604
111
0
0
04.2018

What is bioinformatics?

Laura Harris

Version: 1.0

Short description of what bioinformatics is, it's potential applications, and what it is not.
videos, bioinformatics, genomics, introduction, youtube, Undergraduate, Audience Level
443
86
0
0
04.2018
YouTube video on using statistical notation in Microsoft Word.
videos, online learning, genomics, youtube, statistics symbols, Undergraduate, Audience Level
766
99
0
0
04.2018