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Bioinformatics: Investigating Sequence Similarity - A Plant Biology Approach

Author(s): Ami Erickson

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Summary:
This laboratory module is a modification of the original published on CourseSource with a focus on plant biology. In the final activity, students conduct a BLAST to compare histone protein sequences between Arabidopsis, moss and yeast.

Licensed under CC Attribution-NonCommercial-ShareAlike 4.0 International according to these terms

Version 1.0 - published on 29 May 2019 doi:10.25334/Q4H458 - cite this

Adapted from: Sequence Similarity: An inquiry based and "under the hood" approach for incorporating molecular sequence alignment in introductory undergraduate biology courses v 5.0

Keywords

  1. phylogenetics
  2. bioinformatics
  3. sequencing
  4. FASTA
  5. NCBI
  6. plant biology
  7. NIBLSE
  8. algorithms
  9. incubators
  10. Plant and Fungal Evolution
  11. BLAST
  12. multiple sequence alignment
  13. sequence similarity
  14. BLOSUM scoring matrix
  15. neighbor-joining distance matrix
  16. CourseSource
  17. phylogram

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Version Released DOI Handle Status
1.0 May 29, 2019 10.25334/Q4H458 published view version »