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Video Education Faculty Network for Biological Big Data Education and Research

Integrating Biological Big Data Research into Student Training & Education

 

Goals

  • Educate faculty members on using videos to teach computational skills
  • Support faculty in developing and implementing their own video tutorials for biological big data 

Final Products

Videos on Java for courses at University of Tennessee

Hong Qin

Version: 1.0

Eight videos developed by Hong Qin about using Java at the University of Tennessee Chattanooga
videos, java, bioinformatics, genomics, youtube
1.3K
134
0
0
04.2018

Java array and random number generator, hints

Hong Qin

Version: 1.0

Java, UTC, Fall 2017
videos, java, bioinformatics, genomics, youtube, random number generator
1.2K
259
0
0
04.2018

Java String array demo, switch two elements in an array

Hong Qin

Version: 1.0

CPSC1100, UTC Fall 2017
videos, java, bioinformatics, genomics, youtube, Java String
1.3K
275
0
0
04.2018

Java array demo, loop over assignment and print

Hong Qin

Version: 1.0

CPSC1100, UTC, Fall 2017
videos, java, bioinformatics, genomics, youtube
1.3K
269
0
0
04.2018

Declare and intialize arrays in Java

Hong Qin

Version: 1.0

UTC, CPSC1100
videos, java, bioinformatics, genomics, youtube, Java String
1.3K
275
0
0
04.2018

Java BankAccount demo, using Blue J, v2

Hong Qin

Version: 1.0

CPSC1100 UTC, Spring 2017. Exercises are modified from Big JAVA.
videos, java, genomics, youtube
1.3K
333
0
0
04.2018

Java for-loop, investment problem, with debug flag usage demo

Hong Qin

Version: 1.0

BigJava Chapter 6, UTC CPSC1100 Fall 2017. Debug flag usage is shown.
videos, java, bioinformatics, genomics, youtube, Big Java
1.3K
299
0
0
04.2018

Java while loop demo, investment case

Hong Qin

Version: 1.0

BigJava Chapter 6, UTC, CPSC1100 Fall 2017
java, bioinformatics, genomics, youtube, Big Java, investment case
1.2K
284
0
0
04.2018

Java String substring usage, initials

Hong Qin

Version: 1.0

CPSC1100 Fall 2017, UTC. Big Java Chapter 4.
videos, java, bioinformatics, genomics, youtube, Java String
1.3K
329
0
0
04.2018

UNR Bioinformatics Videos

Pedro Miura

Version: 1.0

Two videos developed by Pedro Miura about bioinformatics at UNR
videos, bioinformatics, genomics, youtube
1.1K
127
0
0
04.2018

Northern Processing

Pedro Miura

Version: 1.0

Using photoshop and illustrator from tif file to make a figure
videos, bioinformatics, genomics, northern processing, photoshop, illustrator
1.1K
237
0
0
04.2018

Aging and Circular RNAs

Pedro Miura

Version: 1.0

A science FIT seminar presented to incoming freshmen at UNR
videos, bioinformatics, RNA, aging, genomics, youtube, circular rna
1.3K
280
0
0
04.2018

Screen Casts for Foundations of Bioinformatics at UCSD

Barry Grant

Version: 1.0

Collection of videos developed by Barry Grant at UCSD for his course, BGGN-213
videos, bioinformatics, genomics, youtube, screen cast
1.1K
129
0
0
04.2018

Using Jetstream for Bioinformatics

Barry Grant

Version: 1.0

A pre-class screencast for UCSD’s Foundations of Bioinformatics course (BGGN-213).
videos, bioinformatics, genomics, youtube, screen cast, jetstream
1.1K
239
0
0
04.2018

How do we do Bioinformatics?

Barry Grant

Version: 1.0

A description of the computational setup for “Foundations of Bioinformatics” (BGGN-213) See: http://thegrantlab.org/bggn213/
bioinformatics, genomics, youtube, screen cast
1.1K
253
0
0
04.2018

What is Bioinformatics?

Barry Grant

Version: 1.0

This second screencast introduces bioinformatics, details major leaning goals & expectations of BGGN-213 and outlines the areas of bioinformatics covered in ...
videos, bioinformatics, genomics, youtube, screen cast, introductory bioinformatics
1.2K
271
0
0
04.2018

Foundations of Bioinformatics (BGGN-213)

Barry Grant

Version: 1.0

This first short screen-cast introduces “Foundations of Bioinformatics” (BGGN-213) course at UCSD and covers some pre-course logistics.
bioinformatics, genomics, youtube, screen cast
1.2K
262
0
0
04.2018

Video Tutorials for Computational Genomics

Laura Harris

Version: 1.0

YouTube videos by Laura Harris on a variety of genomics and bioinformatics topics.
videos, bioinformatics, genomics, fmn, youtube
1.4K
113
0
0
04.2018

ProteinPhysiochemistry

Laura Harris

Version: 1.0

How to determine physiochemical features of proteins using ExPasy Protpram, SOSUI server, and PSortB programs.
videos, bioinformatics, proteins, genomics, youtube, protein physiochemistry, ExPasy Protpram, SOSUI server, PSortB
1.2K
336
0
0
04.2018

LEAGSEA

Laura Harris

Version: 1.0

How to perform Leading Edge Analysis in Gene Set Enrichment Analysis by Broad Institute
videos, bioinformatics, genomics, youtube, LEAGSEA, gene set enrichment, Leading Edge Analysis
1.1K
243
0
0
04.2018

Using Phyre2

Laura Harris

Version: 1.0

How to use Phrye2 and 3DLigandSite to computationally predict protein and active site structure and binding partners (substrates/cofactors/coenzymes).
videos, bioinformatics, proteins, genomics, youtube, phyre2, 3DLigandSite
1.2K
268
0
0
04.2018

NCBI Overview

Laura Harris

Version: 1.0

An overview of some of the databases within NCBI and how to get FASTA sequences.
videos, bioinformatics, FASTA, genomics, NCBI, youtube
1.1K
217
0
0
04.2018

UniProt

Laura Harris

Version: 1.0

Brief description of UniProt and its databases and features
videos, bioinformatics, genomics, youtube, uniprot
1.3K
238
0
0
04.2018

GSEAtheory

Laura Harris

Version: 1.0

Brief introduction to how gene set enrichment analysis works.
videos, bioinformatics, genomics, youtube, gsea
1.4K
272
0
0
04.2018

Simple Heat Maps with Morpheus

Laura Harris

Version: 1.0

Learn how to load an Excel file of raw data into Morpheus and change between relative and global scales.
Excel, bioinformatics, genomics, youtube, morpheus, heat maps
1.3K
271
0
0
04.2018

What is bioinformatics?

Laura Harris

Version: 1.0

Short description of what bioinformatics is, it's potential applications, and what it is not.
videos, bioinformatics, genomics, introduction, youtube
1.1K
245
0
0
04.2018

How to create "funny symbols" (aka math / statistical notation) in Microsoft Word / Office

Laura Harris

Version: 1.0

YouTube video on using statistical notation in Microsoft Word.
videos, online learning, genomics, youtube, statistics symbols
1.7K
262
0
0
04.2018