CourseSource: Resources

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A Multi-Institutional Alternative Assessment Faculty Learning Community: Supporting Teaching in Higher Education

Faculty learning communities (FLCs) provide opportunities for professional development for faculty, teaching staff, and educational developers in a collaborative and open environment. In this essay, we describe our experience organizing,...

Courses: Professional Development and Career Planning

professional developmentAlternative AssessmentFaculty Learning Community

Teaching Tools and Strategies

906

views

132

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0

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Biology from Molecules to Embryos, Interactive Animated Lessons

Visualizing kinetic processes can be an impediment to student mastery of basic science coursework. To remedy this obstacle, I created an educational program called Biology from Molecules to Embryos© (BioME), which provides 28 animated lessons...

Courses: Developmental Biology Genetics Introductory Biology

geneticsBIOMEEmbryologycomputer assisted instructioneducational programeducational videosonline lessonsanimated lessonseducational website

Lesson

3168

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1094

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0

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Squirreling Around for Science: Observing Sciurid Rodents to Investigate Animal Behavior

Hands-on research experiences are important opportunities for students to learn about the nature of inquiry and gain confidence in solving problems. Here, we present an inquiry-based lesson plan that investigates the foraging behavior of sciurid...

Courses: Ecology Ecology Introductory Biology Science Process Skills

foragingbehaviorbehavioral ecologySciuridSquirrelSquirrel-NetTrade-offVigilance

Essay

1221

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178

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Squirreling from Afar: Adapting Squirrel-Net Modules for Remote Teaching and Learning

The shift from face-to-face instruction to remote teaching and learning has proven to be a challenging endeavor for many reasons, including lack of time, resources, and inspiration. Lab courses, the "hands-on" portion of many curricula,...

Courses: Ecology Ecology Introductory Biology Science Process Skills

online learningbehavioral ecologyCUREsRemote teachingfield ecologySquirrelSquirrel-Net

Lesson

2045

views

890

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Exploration of the Human Genome by Investigation of Personalized SNPs

Students often shy away from tedious bioinformatics approaches to exploring their genomes. However, in our expanding digital world these skills are some of the most relevant and valuable. To increase students' interest in their own genomes, I...

Courses: Bioinformatics Genetics Science Process Skills

UCSC genome browsersingle nucleotide polymorphismGenome wide association studiesGenomic organization

Lesson

4908

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495

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Does Organelle Shape Matter?: Exploring Patterns in Cell Shape and Structure with High-Throughput (HT) Imaging

Organelle structure has been studied and visualized for decades; however, publicly available databases that use improved high-throughput microscopy of gene-edited cell lines have recently revolutionized the amount and quality of information now...

Courses: Biochemistry and Molecular Biology Bioinformatics Cell Biology Genetics Science Process Skills

modelingcase studymicroscopystructureOrganellesHigh-throughput (HT)Endoplasmic Reticulum (ER)Fluorescent microscopyHuman Cell Biology

Lesson

1881

views

350

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0

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Engaging Students in Pharmacogenetics: Patient Case Studies Using the PharmGKB Website

Cytochrome P450 (CYP) enzymes are important regulators of drug efficacy and toxicity. Genetic variation in CYP isoforms can impact how well patients respond to medications or experience unwanted toxicities. PharmGKB is an online pharmacogenomics...

Courses: Genetics Toxicology

toxicologyPharmacologydrug metabolismpharmacodynamicspharmacogenetics

Teaching Tools and Strategies

1069

views

140

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Casting a Wide Net via Case Studies: Educating across the undergraduate to medical school continuum in the biological sciences

This article seeks to help bridge undergraduate and medical educators by describing shared educational goals and strategies, highlighting resources relevant for both groups, and exemplifying shared interests through a demonstration resource. Both...

Courses: Genetics

genetic testingdirect-to-consumer genetic testinginformed consentprenatal screeningsecondary findingswhole genome sequencing

Lesson

1757

views

286

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0

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Using Gamification to Teach Undergraduate Students about Scientific Writing

Despite its importance, scientific writing is often deprioritized in undergraduate biology classes. Reasons include assumed prior knowledge, lack of class time, tedious grading, and the complexity and challenges associated with quality writing. To...

Courses: Science Process Skills

gamificationscientific writingE-LearningInstant FeedbackInteractive LearningReading Scientific PapersVIdeo/computer game

Lesson

1529

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305

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0

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Promoting Climate Change Literacy for Non-majors: Implementation of an atmospheric carbon dioxide modeling activity as an inquiry-based classroom activity

Students who are directly involved in scientific activities develop a deeper understanding and appreciation of both scientific knowledge and the scientific process. This understanding is critically important in scientific areas like climate change...

Courses: Introductory Biology Science Process Skills

modelingExcelquantitativeclimate changeEnvironmental Biologyatmospheric carbon dioxide

Lesson

1840

views

241

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0

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Bioinformatics is a BLAST: Engaging First-Year Biology Students on Campus Biodiversity Using DNA Barcoding

In order to introduce students to the concept of molecular diversity, we developed a short, engaging online lesson using basic bioinformatics techniques. Students were introduced to basic bioinformatics while learning about local on-campus species...

Courses: Bioinformatics Introductory Biology

geneticsorganismal biologybioinformaticstaxonomyDNA Barcodingspecies concepts

Lesson

2203

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222

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Diversifying and Humanizing Scientist Role Models Through Interviews and Constructing Slide Decks on Researchers’ Research and Life Experiences

To maintain recruitment and retention, biology teachers face the challenge of finding relatable role models for their students. Our ever-increasing scientific knowledge has been facilitated by people from many different backgrounds, identities,...

Courses: Professional Development and Career Planning Science Process Skills

researchdiversityinclusionScientific ProcessRepresentationScientistRole Models

Lesson

7962

views

397

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0

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Investigating Cell Signaling with Gene Expression Datasets

Modern molecular biology is a data- and computationally-intensive field with few instructional resources for introducing undergraduate students to the requisite skills and techniques for analyzing large data sets. This Lesson helps students: (i)...

Courses: Biochemistry and Molecular Biology Cell Biology

genomicstranscriptionsignaling

Lesson

3634

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600

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0

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Teaching RNAseq at Undergraduate Institutions: A tutorial and R package from the Genome Consortium for Active Teaching

Next-generation sequencing is radically changing the study of biology, but there are currently few resources aimed at teaching the required laboratory and data-analysis skills to undergraduate students. This gap is especially true at primarily...

Courses: Bioinformatics Introductory Biology

statisticsbioinformaticsRNAseqgene expressioncomputer programming

Lesson

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81

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0

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Using Raw Sequence Data to Analyze Tumor Suppressor Mutations

Learning to identify DNA sequence variants from raw sequencing data (electropherograms) is a basic molecular biology skill with applications to basic research and clinical practice. Yet learning to map DNA sequence variants to functional regions...

Courses: Bioinformatics Genetics

bioinformaticsmutationDNAgenomic visualizationparts of a geneclinical consequencesraw data

Lesson

1684

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394

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0

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Who’s That Speci-Mon? Using Pokémon^TM to Understand Biological Terminology Using Greek and Latin Roots

We set out to create a fun and engaging activity using recognizable fictional characters, so students get a chance to practice using Greek and Latin roots to create binomial names. Students in biology courses are faced with a plethora of...

Courses: Anatomy-Physiology Evolution Introductory Biology

linguisticstaxonomyAnatomyGreek and Latin Roots

Lesson

1140

views

148

downloads

1

comments

Exploring the March to Mars Using 3D Print Models

With the increased availability of 3D printers and open databases containing 3D print files, academic institutions are giving more thought into how such technology can be used in the classroom to further student learning. One way that 3D print...

Courses: Introductory Biology Microbiology Science Process Skills

waterMarsmicroorganismsproperties of life

Lesson

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505

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0

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How Many Squirrels Are in the Shrubs? A Lesson Plan for Comparing Methods for Population Estimation

Estimating the population sizes of animals is a key skill for any student interested in ecology, conservation, or management. However, counting animals in natural habitats is difficult, and the many techniques that exist each rely on assumptions...

Courses: Ecology Ecology Introductory Biology Professional Development and Career Planning Science Process Skills

population ecologywildlife managementpopulation estimationsciuridaeSquirrel-Net

Lesson

604

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118

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0

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Visits to the writing center and office hours provide students structured reflection and low-stakes feedback on scientific writing in an Introductory Biology course

Effective written communication of scientific concepts is a critical, but difficult skill for undergraduate STEM majors to acquire. Oftentimes, the grades of lab reports are negatively impacted by sentence structure and the failure to adhere to...

Courses: Introductory Biology

scientific writingwater qualityanalysis of results

Lesson

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views

678

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0

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A Hands-on Introduction to Hidden Markov Models

In this Lesson, we describe a classroom activity that demonstrates how a Hidden Markov Model (HMM) is applied to predict a eukaryotic gene, focusing on predicting one exon-intron boundary. This HMM lesson is part of the BIOL/CS 370...

Courses: Bioinformatics Genetics Science Process Skills

transcriptionexonintronsplicing

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A Multi-Institutional Alternative Assessment Faculty Learning Community: Supporting Teaching in Higher Education

Biology from Molecules to Embryos, Interactive Animated Lessons

Squirreling Around for Science: Observing Sciurid Rodents to Investigate Animal Behavior

Squirreling from Afar: Adapting Squirrel-Net Modules for Remote Teaching and Learning

Exploration of the Human Genome by Investigation of Personalized SNPs

Does Organelle Shape Matter?: Exploring Patterns in Cell Shape and Structure with High-Throughput (HT) Imaging

Engaging Students in Pharmacogenetics: Patient Case Studies Using the PharmGKB Website

Casting a Wide Net via Case Studies: Educating across the undergraduate to medical school continuum in the biological sciences

Using Gamification to Teach Undergraduate Students about Scientific Writing

Promoting Climate Change Literacy for Non-majors: Implementation of an atmospheric carbon dioxide modeling activity as an inquiry-based classroom activity

Bioinformatics is a BLAST: Engaging First-Year Biology Students on Campus Biodiversity Using DNA Barcoding

Diversifying and Humanizing Scientist Role Models Through Interviews and Constructing Slide Decks on Researchers’ Research and Life Experiences

Investigating Cell Signaling with Gene Expression Datasets

Teaching RNAseq at Undergraduate Institutions: A tutorial and R package from the Genome Consortium for Active Teaching

Using Raw Sequence Data to Analyze Tumor Suppressor Mutations

Who’s That Speci-Mon? Using Pokémon^TM to Understand Biological Terminology Using Greek and Latin Roots

Exploring the March to Mars Using 3D Print Models

How Many Squirrels Are in the Shrubs? A Lesson Plan for Comparing Methods for Population Estimation

Visits to the writing center and office hours provide students structured reflection and low-stakes feedback on scientific writing in an Introductory Biology course

A Hands-on Introduction to Hidden Markov Models

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