CourseSource: Resources

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Bacteria to Brains in Backyard Coyotes: An Interdisciplinary Pedagogical Case Study

Our interdisciplinary pedagogical case study explores the differences between rural and urban coyotes at the levels of organismal and community ecology. The focus is on how coyotes’ gut microbiomes could affect their behavior via...

Courses: Cell Biology Ecology Ecology Evolution Immunology Introductory Biology Microbiology

dietanimal behaviorimmune systemmicrobiomeNervous systemgut-brain axisImmunoReachdysbiosisCoyoteCytokines

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463

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42

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Space Mission Ecology: Making Connections Among Science Disciplines Through the Lens of a Unique Plant

With this case study, we aim to increase awareness of essential services plants provide to society, as well as the importance of fundamental aspects of ecology for other disciplines and the interconnectedness among different fields of science in...

Courses: Ecology Ecology Introductory Biology Plant Biology Science Process Skills

ecologycollaborationplant biologyScience CommunicationBioregenerative Life SupportInterdisciplinary Connections

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1281

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169

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Central Dogma, Dictionaries, and Functions: Using Programming Concepts to Simulate Biological Processes

Technologies like next-generation sequencing, proteomics, and high-throughput phenotyping have transformed the way we do biology. There is a continued need for scientists with computational skills to analyze biological data while understanding the...

Courses: Bioinformatics

computationpythonJupyter notebookFunctionscentral dogmaDictionaries

Teaching Tools and Strategies

1069

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140

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Casting a Wide Net via Case Studies: Educating across the undergraduate to medical school continuum in the biological sciences

This article seeks to help bridge undergraduate and medical educators by describing shared educational goals and strategies, highlighting resources relevant for both groups, and exemplifying shared interests through a demonstration resource. Both...

Courses: Genetics

genetic testingdirect-to-consumer genetic testinginformed consentprenatal screeningsecondary findingswhole genome sequencing

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1452

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155

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The Developmental Origins of Mythology: A Pandemic-Inspired Innovative Developmental Biology Laboratory Exercise

From an experiential, hands-on perspective, the Developmental Biology Laboratory is easily amenable to a wide range of undergraduate-friendly experiments. Thus, pivoting to a virtual laboratory during the COVID-19 pandemic required significant...

Courses: Developmental Biology

gastrulationaxis formationlimb developmentchimeramidline

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1613

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445

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Using Structured Decision Making to Explore Complex Environmental Issues

Environmental issues are inherently complex, often requiring multiple interested parties to come together before agreeing on a solution. Structured decision making is a tool used by federal and state management agencies to find solutions that...

Courses: Ecology Ecology

interdisciplinarysocio-ecological systemsscience policystakeholderstructured decision making

Teaching Tools and Strategies

3637

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1718

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A 360˚ View of COVID-19

In March 2020, institutions underwent a massive transition to distance learning as a result of the COVID-19 pandemic. With so little time to devise new materials to maximize learning in the new virtual environment, instructors devised a variety of...

Courses: Biochemistry and Molecular Biology Bioinformatics Cell Biology Evolution Genetics Immunology Introductory Biology Microbiology Science Process Skills

geneticsImmunologyBiochemistrybioinformaticsmolecular evolutionpublic healthvirusCOVID19

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6614

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1646

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Single Cell Insights Into Cancer Transcriptomes: A Five-Part Single-Cell RNAseq Case Study Lesson

There is a growing need for integration of “Big Data” into undergraduate biology curricula. Transcriptomics is one venue to examine biology from an informatics perspective. RNA sequencing has largely replaced the use of microarrays for whole...

Courses: Biochemistry and Molecular Biology Bioinformatics Cell Biology Genetics Introductory Biology

bioinformaticscancertranscriptomicshigh-throughputData wranglingSingle cell RNA sequencingq

Teaching Tools and Strategies

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148

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Lateral Transfer Maps as a Metacognitive Tool in First Year STEM Courses

We introduce the Lateral Transfer Map (LTM), a tool for students to actively and visually explore the transfer of ideas, skills, and concepts across concurrent coursework. The LTM is an extension of a concept map, replacing interconnected concepts...

Courses: Professional Development and Career Planning Science Process Skills

concept mapmetacognitionfirst-year studenttransfer

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375

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60

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Environmental Injustice: When the Grass is Greener on the Other Side

Environmental pollution is a global threat that is especially prevalent in heavily industrialized and urbanized areas. Pollution can be found in many forms, such as natural and synthetic pollutants from natural and anthropogenic processes. These...

Courses: Ecology Ecology Introductory Biology Science Process Skills Toxicology

human healthenvironmental injusticeEnvironmental PollutionSystemic BiasesIdeological AwarenessUrban Ecology and Development

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1808

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479

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Out of Your Seat and on Your Feet! An adaptable course-based research project in plant ecology for advanced students

University capstone projects can offer science students a rich research experience that illustrates the process of doing scientific research, and can also help students better choose future academic and career pathways. While capstone projects are...

Courses: Ecology Ecology Plant Biology Science Process Skills

statisticsactive learningecologyinterdisciplinaryplantscommunicating sciencegroup workfield workproces of science

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3550

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263

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SEAS CURE: Exploring Coral Biology Across Scales

Complex biological concepts (like symbiosis and coral biology) that span multiple scales and cross disciplinary boundaries are often difficult for students to understand. This complexity is compounded by the challenges inherent to teaching and...

Courses: Anatomy-Physiology Cell Biology Ecology Ecology Introductory Biology Science Process Skills

microscopyAnatomySymbiosisMetabolismbleachinginvertebratedinoflagellate

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2561

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641

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Follow the Sulfur: Using Yeast Mutants to Study a Metabolic Pathway

Students are frequently overwhelmed by the complexity of metabolic pathways and they think they have "learned" the pathway when they have memorized the individual reactions. This laboratory lesson helps students to understand the...

Courses: Biochemistry and Molecular Biology Genetics Introductory Biology Microbiology Science Process Skills

SelectionyeastMetabolismcysteinemediamethioninemutantPathwaysulfur

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2160

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469

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Teaching students to read, interpret, and write about scientific research: A press release assignment in a large, lower-division class

A central skill in any science discipline is the ability to read, understand, and discuss the primary literature of the discipline. However, teaching this skill presents unique challenges within large, lower-division courses. To assess our...

Courses: Cell Biology Science Process Skills

cell biologyScience Communicationscientific literacyGraduate Teaching Assistant Professional DevelopmentBiological LiteracyPrimary ResearchWriting Skills

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424

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Teaching epidemiology and principles of infectious disease using popular media and the case of Typhoid Mary

Allied health students often struggle to understand how particular content, such as epidemiology, connects to their future careers. This activity uses the case of Typhoid Mary as a foundation for exploring epidemiology and infectious disease...

Courses: Microbiology Science Process Skills

epidemiologycase studyinfectous diseasepopular mediaTyphoid Mary

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3505

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1299

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A CRISPR/Cas Guide RNA Design In Silico Activity

CRISPR biotechnologies inspired by the Clustered Regularly Interspaced Short Palindromic Repeat RNA-guided nuclease adaptive bacterial immune system have revolutionized biology research and become ubiquitous tools for hypothesis and...

Courses: Biochemistry and Molecular Biology Bioinformatics Cell Biology Genetics

bioinformaticsgene expressiongenetic basis of diseaseCRISPR/Cas9genetic engineeringin silico

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528

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105

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An Interrupted Case Study on Urban Prairie Restoration

Engaging students in meaningful discussions can be a challenging task for science instructors, especially in introductory courses. The story-telling approach used in case studies can increase student participation by demonstrating the relevance of...

Courses: Ecology Ecology Introductory Biology Science Process Skills

urban ecologyPrescribed fireEcosystem Servicesecological restorationwoody encroachmentrangeland ecology

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2115

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309

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Debating Conservation: Developing Critical Thinking Skills in Introductory Biology Classes

Role-playing activities in the classroom promote students’ critical thinking, research, and communication skills. We present an activity where students debate a current controversy in conservation. In our case study, students debate the...

Courses: Ecology Ecology Introductory Biology

Restorationtrophic cascadeecosystem function

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4206

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286

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Analysis of Microbiomes Using Free Web-Based Tools in Online and In-Person Undergraduate Science Courses

Our understanding of microbiomes, or the collection of microorganisms and their genes in a given environment, has been revolutionized by technological and computational advances. However, many undergraduate students do not get hands-on experiences...

Courses: Bioinformatics Ecology Ecology Microbiology

microbiomeDNA SubwayCyVerseCourse based undergraduate researchQIIME2ranacapa

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3288

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547

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A Student-Led Hearing on the Use of HeLa Cells in Research

In this role-playing case study, students will learn about the HeLa cell line and its origins while examining multiple perspectives surrounding the cell line and its uses. The goal of this case study is for students to use guided questions to...

Courses: Cell Biology Science Process Skills

bioethicsscience policycell culturedebateHeLa cellsinformed consentrole playsocial justice issues

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Bacteria to Brains in Backyard Coyotes: An Interdisciplinary Pedagogical Case Study

Space Mission Ecology: Making Connections Among Science Disciplines Through the Lens of a Unique Plant

Central Dogma, Dictionaries, and Functions: Using Programming Concepts to Simulate Biological Processes

Casting a Wide Net via Case Studies: Educating across the undergraduate to medical school continuum in the biological sciences

The Developmental Origins of Mythology: A Pandemic-Inspired Innovative Developmental Biology Laboratory Exercise

Using Structured Decision Making to Explore Complex Environmental Issues

A 360˚ View of COVID-19

Single Cell Insights Into Cancer Transcriptomes: A Five-Part Single-Cell RNAseq Case Study Lesson

Lateral Transfer Maps as a Metacognitive Tool in First Year STEM Courses

Environmental Injustice: When the Grass is Greener on the Other Side

Out of Your Seat and on Your Feet! An adaptable course-based research project in plant ecology for advanced students

SEAS CURE: Exploring Coral Biology Across Scales

Follow the Sulfur: Using Yeast Mutants to Study a Metabolic Pathway

Teaching students to read, interpret, and write about scientific research: A press release assignment in a large, lower-division class

Teaching epidemiology and principles of infectious disease using popular media and the case of Typhoid Mary

A CRISPR/Cas Guide RNA Design In Silico Activity

An Interrupted Case Study on Urban Prairie Restoration

Debating Conservation: Developing Critical Thinking Skills in Introductory Biology Classes

Analysis of Microbiomes Using Free Web-Based Tools in Online and In-Person Undergraduate Science Courses

A Student-Led Hearing on the Use of HeLa Cells in Research

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