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    Leigh Ann Samsa created All group members project

    Hi Team, 

    I worked on revising the case we discussed this summer to fit a much simpler, user-friendly data set. It is currently written to…

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    Hi Team, 

    I worked on revising the case we discussed this summer to fit a much simpler, user-friendly data set. It is currently written to target students in upper-level cell biology, genetics, or molecular biology courses who have minimal programming experience, intermediate Excel skills, and at least one statistics course. Use the link below to access this five-part case and associated data files. It is located in our shared folder on Google Drives in the folder "Gary ccRCC scRNAseq case study".

    Please revise and comment on the Google Doc! 

    https://drive.google.com/drive/u/0/folders/1Phu4h3Qs1z0Ei9iqCdHOGGinYpF_Pj3i 

    Regards,

    Leigh Ann Samsa

     

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      Adam Kleinschmit created All group members project

      I finished working though the updated case study with the ccRCC dataset and left some feedback and comments. I look forward to helping further…

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      I finished working though the updated case study with the ccRCC dataset and left some feedback and comments. I look forward to helping further develop the case after we complete the first round of feedback :)

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      Kathleen McAdams created All group members project

      Hi everyone,

      I tried working through the case but Granatum was not working during any of my attempts. I tried on different days and different…

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      Hi everyone,

      I tried working through the case but Granatum was not working during any of my attempts. I tried on different days and different computers with no luck. However, I still added comments to the document and suggestions aside from the Granatum portion. 

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    Amanda Solem created All group members project

    I added some info to the pre-assessment trying to follow our assessment preliminary ideas and the learning outcomes we initially added.  It…

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    I added some info to the pre-assessment trying to follow our assessment preliminary ideas and the learning outcomes we initially added.  It would be great if anyone might take a look and give feedback about what to delete, what to add, etc.  As an initial try, I took the informed consent template from NCstate, but I am happy to update to whatever institution we go through.

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      Adam Kleinschmit created All group members project

      Thanks for taking the lead on quiz question creation for the CS! The questions look great! I copied the questions you generated and pasted…

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      Thanks for taking the lead on quiz question creation for the CS! The questions look great! I copied the questions you generated and pasted them into our assessment Google Doc with the idea that it may be easier for collaboration and providing feedback. I made a few suggestions in the assessment Google Doc, but plan to revisit the questions after taking a look at the CS again.

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    Dave Clements joined All group members project
    joined the project
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    Yee Mey Seah joined All group members group
    Joined the "HITS" group
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    Sabrina Robertson created All group members project

    October/November update:  Kaitlyn and I met and went over the case.  It is in great shape.  We are now working on an answer key,…

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    October/November update:  Kaitlyn and I met and went over the case.  It is in great shape.  We are now working on an answer key, pre-work assignments for students and thinking about assessment and evaluation questions.  We hope to have the case ready for students by late spring

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    Carlos Christopher Goller joined All group members project
    joined the project
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    Sabrina Robertson joined All group members project
    joined the project
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    Sabrina Robertson created All group members project

    October Update: We submitted our project in August to NCCSTS

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    Carlos Christopher Goller updated All group members group
    Page "Get Involved" updated in group "HITS"
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    Elia Crisucci joined All group members project
    joined the project
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    Tara Holmberg created All group members project

    Our Ecosystem Diversity Case Study update!

    • We completed drafts of these sections of the “main” case
      • intro (hook)
      • questions…

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    Our Ecosystem Diversity Case Study update!

    • We completed drafts of these sections of the “main” case
      • intro (hook)
      • questions/card sort activity on high throughput sequencing
    • We completed drafts of optional parts of the case that some of us intend to use in addition to the main case
      • Water chemistry webquest created with accompanying lab activity being prepared
      • Understanding diversity in conservation and comparing DNA metabarcoding in terrestrial and aquatic systems.
    • The HT data used in this case is open source provided through the National Ecological Observatory Network's databases.
      • We identified a pair of software packages to use in the analysis of the NEON data - MEGA and MEGAN
      • We verified that the software will work for our purposes
      • Have started instructions for the use of this software
      • Have downloaded the dataset for use in the case
    • Pilots
      • TJ Holmberg will be pilot testing portions of the case during her unit on community ecology this fall.
      • Melissa will be piloting the webquest and water chemistry lab activity during the winter semester (~March)
    • We collaborated through QUBES, email and a conference call

    Thanks!

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    Carlos Christopher Goller created All group members announcement
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    Carlos Christopher Goller deleted All group members announcement
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    Carlos Christopher Goller uploaded All group members project
    uploaded 10-30-2019 WORKING DRAFT Does organelle shape matter - CellExplorer Case.docx in project files
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    Carlos Christopher Goller created All group members project

    We are learning more about the incredible tools and resources available on the Allen Cell Explorer. We've incorporated some edits since the…

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    We are learning more about the incredible tools and resources available on the Allen Cell Explorer. We've incorporated some edits since the spring 2019 version of the case and included use of the tool to measure ER volume. We also added the IMSC site: https://imsc.allencell.org/?page=3d-viewer

    We are working on the "teaching notes" to help others use this case.

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    Carlos Christopher Goller created All group members project
    checked off a to do item
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    Carlos Christopher Goller created All group members project
    commented on a to do item
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    Carlos Christopher Goller created All group members project
    checked off a to do item
  • PLG_GROUPS_ACTIVITY_PROFILE_PICTURE
    Carlos Christopher Goller created All group members project
    checked off a to do item
  • PLG_GROUPS_ACTIVITY_PROFILE_PICTURE
    Carlos Christopher Goller created All group members project
    checked off a to do item