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    Potential Scenario
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    2011-Nakul-Chitnis-Introduction to Mathematical Epidemiology - Deterministic Compartmental Model
    Deterministic compartmental models form the simplest models in the mathematical study of infectious disease dynamics. They assume that a population is homogenous (all people are the same) and the only distinction is in their disease state.
    sensitivitydiseaseinfectionthresholdcompartmentbifrucation
    Potential Scenario
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    2003-Yildirim-Mackey-Feedback Regulation in the Lactose Operon
    A mathematical model for the regulation of induction in the lac operon in Escherichia coli is presented.
    mRNAlactoselactose operonfeedback regulation
    Free Online Textbook
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    2014-Andre_De Ross-Modeling Population Dynamics
    This course is intended as an introduction to the formulation, analysis and application of mathematical models that describe the dynamics of biological populations.
    predator-preycompetitionpopulationgrowthbifrucationtext
    Free Online Textbook
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    2012-Brian_Ingalls-Mathematical_Modelling_in_Systems_Biology
    This text provides an introduction to dynamic mathematical modeling of cellular processes. The emphasis is on using computational tools to investigate models of cellular phenomena.
    biologygene regulatory networksModelsmetabolic networkssignal transduction pathwayselectrophysiology
    Modeling Scenario
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    1-137-SheepGraze-ModelingScenario
    In this activity, students will apply graphical analysis (such as phase lines) to determine the long-term predictions of a differential equation model for pasture grass using two different formulas for the herbivore consumption rate.
    herbivoreplantphase linesbifurcationoverexploitationsheepgraze
    Free Online Textbook
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    2016-Rob_deBoer-Population Dynamics  A Graphical Approach
    This book is an introduction into modeling population dynamics in ecology. Because there are several good textbooks on this subject, the book needs a novel ecological niche to justify its existence.
    mathematical modelstabilitycompetitionSIRbifurcationconsumptionpopulation population dynamicsgeneral replicationnonlinear density dependenciesfunctional responsepersistencephase plan analysis
    Potential Scenario
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    2009-Schaffer-Bronnikova-Controlling malaria
    The present paper reviews potential control strategies from the viewpoint of mathematical epidemiology.
    epidemiologymalariabifurcationmosquitotransgenic mosquitoes
    Potential Scenario
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    2008-Brewer-EtAl-Fitting ordinary differential equations to short time course data
    In this paper, we present a survey of existing algorithms and describe the main approaches. We also introduce and evaluate a new efficient technique for estimating ODEs linear in parameters particularly suited to situations where noise levels are...
    time seriesEvaluation SPLINEgeneleast squaresbifurcation
    Free Online Textbook
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    2015-H_Sayama-Intro to Modeling and Analysis of Complex Systems
    Introduces students to mathematical/computational modeling and analysis developed in the emerging interdisciplinary field of Complex Systems Science.
    textbooktext
    Free Online Textbook
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    2011-Richard_Fitzpatrick-Newtonian_Dynamics
    This 300 page text is packed with motivational physics. Indeed, Professor Fitzpatrick brings us to the origins of why differential equations are the dominant tools of mathematics in the study of motion.
    modelingtextbookphysicsbifurcation
    Potential Scenario
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    2019-Fan_ Li_ Yin- Impact_of_environmental_tax_on_green_development-nonlinear_dynamical_system_analysis
    This study analyzes the impact of environmental tax on green development by using a four-dimension dynamical system.
    environmentsystemequilibrium pointmodel chaoseconomic growthnonlinear
    Potential Scenario
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    2019-Stender_EtAl-Recovery_Of_Differential_Equations_From_Impulse_Response
    In this work, a recent method, which allows reconstructing differential equations from time series data, is extended for higher degrees of automation.
    time seriesregressionresponseimpulseoscillationsignal processingsparse regressionsystem identification
    Modeling Scenario
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    5-015-RunnersSynchronize-ModelingScenario
    In this modeling scenario we practice finding and classifying equilibria of a one-variable differential equation. We do this in the context of a phase model which is often a simpler way of studying oscillatory phenomena.
    predatorAutonomous equationsoscillationcoupled oscillatorsynchronyrunnerpreyKuramato model
    Free Online Textbook
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    2012-Brian_Ingalls-Mathematical Modelling in Systems Biology An Introduction
    This is a comprehensive text with much biology background to motivate the mathematical modeling, exercises and answers, and many rich examples.
    spatialsensitivity analysisgene regulatory networksstochasticbifurcationmetabolic networkselectrophysiologytransductionrate lawsbiochemical reactions