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Downloads
Views
Date
Relevance
Article or Presentation
135
views
61
downloads
0
comments
2015-European_Bioinformatics_Institute-Bio-Models-Database
Bio Models Database is a repository of computational models of biological processes. Models described from literature are manually curated and enriched with cross-references. All models are provided in the Public Domain.
biology
database
bioinformatics
Models
computational models
Potential Scenario
150
views
40
downloads
0
comments
2012-Transtrum-Qiu-Optimal experiment selection for parameter estimation in biological differential equation models
We explore the question to what extent parameters can be efficiently estimated by appropriate experimental selection.
experimental design
systems biology
Association & Data Fitting
reaction rates
decay rates
Potential Scenario
107
views
36
downloads
0
comments
2011-GA_Koch-Noble-Drugs in the Classroom Using Pharmacokinetics to Introduce Biomathematical Modeling
By beginning with simple model involving the half-life of a drug, students take advantage of their mathematical abilities to explore the biology.
Biomathematics
pharmacokinetics
Potential Scenario
257
views
41
downloads
0
comments
2018-Robert_Phair-Differential_equation_methods_for_simulation_of_GFP_kinetics_in_non–steady_state_experiments
Here, we derive new tracer kinetic analytical methods for non–steady state biological systems by constructing mechanistic nonlinear differential equation models of the underlying cell biological processes.
protein quality control
kinetics
Cells
steady state
chemical kinetics
fluouresence
photoactivation
inytracellular
Article or Presentation
101
views
27
downloads
0
comments
2002-Patrick_Nelson-Alan_Perelson-Mathematical_analysis_of_delay_differential _equation_models_of_HIV-1_infection
Models of HIV-1 infection that include intracellular delays are more accurate representations of the biology and change the estimated values of kinetic parameters when compared to models without delays.
delay
HIV-1
T cells
combination antiviral therapy
Potential Scenario
109
views
56
downloads
0
comments
2010-Roberto_Munoz-Alicea-Mathematical Model for Enzyme Kinetics-Multiple Timescales Analysis
We study a basic model for enzyme substrate reaction. Through several assumptions and via nondimensionalization, we simplify the equations.
kinetics
Enzyme
substrate
nondimensionalization
multiple timescales
Potential Scenario
166
views
46
downloads
0
comments
2010-Jungck-EtAl-Mathematical Manipulative Models-In Defense of Beanbag Biology
This paper offers up samples of projects from the Bio- QUEST Curriculum Consortium’s 24-yr experience of holding faculty development workshops for biology and mathematics educators.
epidemiology
simulation
infectious disease
disease transmission
disease
in-class activity
bean bag activity
Potential Scenario
137
views
44
downloads
0
comments
1997-Bonnie_Shulman-Using Original Sources to Teach the Logistic Equation
This Module uses original data, diagrams, and texts from three original sources to develop the logistic model of growth in natural systems with limited resources.
logistic
original source
Potential Scenario
126
views
47
downloads
0
comments
2018-Dyjuan_Tatro-The_Mathematics_of_Cancer-Fitting_Gompertz_Equation_to_Tumor_Growth
Fitting the Gompertz Model to long term breast cancer study data, this project ascertains gompertzian parameters that can be used to predicts tumor growth as a function of time.
tumor
growth
Gompertz
fitting
parameter
Potential Scenario
96
views
32
downloads
0
comments
2019-Fred_Brauer-The_Final_Size_of_a_Serious_Epidemic
In an epidemic of a serious disease, there is likely to be behavioral response that decreases the epidemic size considerably.
epidemic
final size
behavioral response
SIER model
relations
Potential Scenario
143
views
47
downloads
0
comments
2011-Nancy_Rodrıguez-Applied Partial Differential Equations in Crime Modeling and Biological Aggregation
In the first part we study a fully-parabolic system of PDEs for residential burglary ‘hotspots’ (spatio-temporal areas of high density of crime). In this work we are concerned with the existence and uniqueness of solutions of this model. In
biology
Diffusion
Keller-Segel model
chemotaxis
crime
Potential Scenario
156
views
55
downloads
0
comments
2017-D_Goulet-Modeling, Simulating, and Parameter Fitting of Biochemical Kinetic Experiments
In many chemical and biological applications, systems of differential equations containing unknown parameters are used to explain empirical observations and experimental data. The differential equations are typically nonlinear.
optimization
Biochemistry
sensitivity analysis
chromatography
mass action
cluster analysis
conservation laws
dimerization
estrogen receptor protein
Potential Scenario
179
views
94
downloads
0
comments
2016-Lofgren-EtAl-Equations of the End Teaching Mathematical Modeling Using the Zombie Apocalypse
In this article, we explore several uses of zombie epidemics to make mathematical modeling and infectious disease epidemiology more accessible to public health professionals, students, and the general public.
simulation
infectious disease
disease
epidemic
Zombie
White Zed
Potential Scenario
116
views
59
downloads
0
comments
2015-Dios-EtAl-How Engineers deal with Mathematics solving Differential Equations
The students of fourth course, of the bachelor’s degree in Computer Sciences or Industrial Engineering at the University of Salamanca (Spain), they learn mathematics solving real problems with the help of the acquired interdisciplinary knowledge.
assessment
engineering education
Simulink
Potential Scenario
182
views
58
downloads
0
comments
2006-Graves-Peckham-Pastor-2D differential equations model for mutualism
We develop from basic principles a two-species differential equations model which exhibits mutualistic population interactions.
population dynamics
Lotka-Volterra
growth rate
mutualism
Lichen
Potential Scenario
152
views
43
downloads
0
comments
2002-Nelson-Perelson-Mathematical analysis of delay differential equations models of HIV-1 infection
We develop and analyze a set of models that include intracellular delays, combination antiretroviral therapy, and the dynamics of both infected and uninfected T cells.
infection
HIV
T cells
Potential Scenario
133
views
49
downloads
0
comments
2018-Winkle-Igoshin-Bennett-Josic-Ott-Modeling_Mechanical_Interactions_in_Growing_Populations_of_Rod-Shaped_Bacteria
Here, we present an agent-based model that allows growing cells to detect and respond to mechanical interactions.
bacteria
agent-based
populationb
rod-shaped
cellular growth
Modeling Scenario
196
views
255
downloads
0
comments
6-019-EnablingEpidemicExploration-ModelingScenario
We became aware of several interesting possibilities for a modeling opportunity with data and we invited you to explore the several routes to parameter estimation in a SIR model with respect to the data offered.
Akaike Information Criterion
Michaelis-Menten
epidemic
saturation
gradient
least sum of square errors
Potential Scenario
209
views
62
downloads
0
comments
2017-Justin_Krueger-Parameter Estimation Methods for Ordinary Differential Equation Models with Applications to Microbiology
We demonstrate the feasibility of principal differential analysis using simulation studies and then apply the method to intestinal and vaginal microbiota data.
microbiology
Lotka Volterrra
microbiota
Potential Scenario
115
views
51
downloads
0
comments
2016-Barbarossa-Kuttler-Mathematical Modeling of Bacteria Communication in Continuous Cultures
This paper presents a simple system of delay differential equations (DDEs) for quorum sensing of Pseudomonas putida with one positive feedback plus one (delayed) negative feedback mechanism.
gene regulatory networks
chemostat
bifurcation
Numerical Simulation
quorum sensing
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