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    Potential Scenario
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    2015-Cano-EtAl-Bringing partial differential equations to life for students
    This work describes how to use an authoring tool, Easy Java Simulations, to build interactive simulations using FreeFem++ (Hecht F 2012 J. Numer. Math. 20 251) as a PDE solver engine.
    Java SimulationFreeFemauthoring toolsauthoring methodsphysical modellingclassroom teaching
    Potential Scenario
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    2018-Robert_Phair-Differential_equation_methods_for_simulation_of_GFP_kinetics_in_non–steady_state_experiments
    Here, we derive new tracer kinetic analytical methods for non–steady state biological systems by constructing mechanistic nonlinear differential equation models of the underlying cell biological processes.
    protein quality controlkineticsCellssteady statechemical kineticsfluouresencephotoactivationinytracellular
    Potential Scenario
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    2011-Carl_Leinbach-Beyond Newton's law of cooling - estimation of time since death
    The paper offers an excellent history of temperature-based methods and then proceeds to demonstrate these with some data. Here the history is rich and will support student investigation as well as faculty development.
    time of deathNewton's aw of cooling
    Potential Scenario
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    2005-Albert_Tarantola-Inverse Problem Theory and Methods for Model Parameter Estimation
    This is a bible of approaches to support parameter estimation approaches in inverse problems. Theory and algorithms are offers with examples.
    Algorithminverse probleminverse
    Potential Scenario
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    2017-GR_Gustafson-Differential Equations Course Materials
    There are many applications from compartment and cascade analysis, recycling brine tank, home heating with multiple rooms, chemostat, microbes, heartbeats, lidocaine, nutrient flow in an aquarium, biomass transfer, pesticides, forecasting prices,...
    chemostatmicrobesbiomassforecastingtransfercompartmentpesticidesearthquaketankheatinglidocainebrineheartbeatsnutrient flowaquariumelectric networkscircuitsloggingbuildingcascade
    Potential Scenario
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    2013-Fathalla_Rihan-Delay Differential Equations in Biosciences - Parameter estimation and sensitivity analysis
    This is a review article to show that delay differential models have a richer mathematical framework (compared with models without memory or after-effects) and a better consistency with biological phenomena such dynamical diseases and cell growth...
    epidemiologysensitivityImmunologyphysiologyRK-methodstime-lags
    Potential Scenario
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    2007-Bellomo-De_Angelis-Delitala-Lecture Notes on Mathematical Modelling in Applied Sciences
    The Lectures Notes correspond to the first part of the course devoted to modelling issues to show how the application of models to describe real world phenomena generates mathematical problems to be solved by appropriate mathematical methods.
    spring massLegendre polynomialsintegro-differential equationskinetic theory
    Potential Scenario
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    2017-Justin_Krueger-Parameter Estimation Methods for Ordinary Differential Equation Models with Applications to Microbiology
    We demonstrate the feasibility of principal differential analysis using simulation studies and then apply the method to intestinal and vaginal microbiota data.
    microbiologyLotka Volterrramicrobiota
    Potential Scenario
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    1999-Khorasheh-Ahmadi-Gerayeli-Application of Direct Search Optimization for Pharmacokinetic Parameter Estimation
    For simple pharmacokinetic compartmental models, analytical solution to the governing differential equations provide a mean to evaluate the associated rate constants. Such methods, however, can not be used used for more complex multi-compartment...
    sum of square errorsleast squarespharmacokineticslineteicscompartmental modelsdirect search
    Potential Scenario
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    2017-D_Goulet-Modeling, Simulating, and Parameter Fitting of Biochemical Kinetic Experiments
    In many chemical and biological applications, systems of differential equations containing unknown parameters are used to explain empirical observations and experimental data. The differential equations are typically nonlinear.
    optimizationBiochemistrysensitivity analysischromatographymass actioncluster analysisconservation lawsdimerizationestrogen receptor protein
    Potential Scenario
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    2015-Dios-EtAl-How Engineers deal with Mathematics solving Differential Equations
    The students of fourth course, of the bachelor’s degree in Computer Sciences or Industrial Engineering at the University of Salamanca (Spain), they learn mathematics solving real problems with the help of the acquired interdisciplinary knowledge.
    assessmentengineering educationSimulink
    Potential Scenario
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    2005-P_Howard-Modeling with ODE
    In these notes we consider three critical aspects in the theory of ordinary differential equations: developing models of physical phenomena, mathematically well-posed, solving ODE numerically .
    Fluid Mechanicscompartmentpopulationsvariational methodsHamiltonian mechanics
    Potential Scenario
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    2018-Akman-EtAl-Parameter Estimation in Ordinary Differential Equations Modeling via Particle Swarm Optimization
    We demonstrate Particle Swarm Optimization efficacy by showing that it outstrips evolutionary computing methods previously used to analyze an epidemic model.
    epidemicParticle Swarm Optimizationoptimize parameters
    Potential Scenario
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    1999-T_Chen-HL_He-GM_Church-S_Shafer-Modeling Gene Expression with Differential Equations
    The paper proposes and give great detail for a differential equation model for gene expression with two methods for constructing the model from a set of temporal data.
    gene expressiongenekineticgene translationgene transcription
    Potential Scenario
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    1992-John_Mathews-Bounded population growth-a curve fitting lesson
    The purpose of this article is to present two methods for fitting the logistic curve to data supplied by the U. S. census bureau.
    datalogisticlinearizationfitting
    Potential Scenario
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    2008-Brewer-EtAl-Fitting ordinary differential equations to short time course data
    In this paper, we present a survey of existing algorithms and describe the main approaches. We also introduce and evaluate a new efficient technique for estimating ODEs linear in parameters particularly suited to situations where noise levels are...
    time seriesEvaluation SPLINEgeneleast squaresbifurcation
    Potential Scenario
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    2003-Rasmussen-Keynes-Lines of Eigenvectors and Solutions to Systems of Linear Differential Equations
    The purpose of this paper is to describe an instructional sequence where students invent a method for locating lines of eigenvectors and corresponding solutions to systems of two first order linear ordinary differential equations with constant...
    instructional designeigenvalueseigenvalue analysis
    Potential Scenario
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    2014-Blomhøj-EtAl-Compartment models
    An overview of compartment models with many rich illustrations and much attention to various numerical methods in solutions of the resulting differential equations using Matlab. Also included is a section on the limitations of compartment models.
    concentrationkineticsphysiologycompartmentsalttankbalancereactionsminkbathtub
    Potential Scenario
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    2012-Shargel-Yu-AccessPharmacy-Applied Biopharmaceutics and Pharmacokinetics
    Step by step formation of drug absorption models is shown with many good graphics of system and plots. Solutions are offered but no solution methods are shown.
    Michaelis-MentenEnzymesubstratecompartmentpharmacokineticsrate constanturinary dataabsorption rate
    Potential Scenario
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    2017-Chávez-EtAl-Modeling and Analysis of Integrated Pest Control Strategies via Impulsive Differential Equations
    The paper is concerned with the development and numerical analysis of mathematical models used to describe complex biological systems in the framework of Integrated Pest Management (IPM).
    bifurcationschaosimpulsive modellimit cycleshysteretic effectsperiod-doubling cascades