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Downloads
Views
Date
Relevance
Potential Scenario
212
views
44
downloads
0
comments
2012-Greer-Palin-Students in Differential Equations and Epidemiology Model a Campus Outbreak of pH1N1
We describe a semester-long collaboration between a mathematics class and a biology class. Students worked together to understand and model the trajectory of the pandemic H1N1, pH1N1, outbreak across campus in fall 2009.
H1N1
pandemic
spread
outbreak
pH1N1
Potential Scenario
173
views
44
downloads
0
comments
2017-Helen-Byrne-Further Mathematics Biology
These studies will be in the context of ecological, biological and biochemical applications.
epidemics
chemotaxis
enzyme-substrate
ion channels
nerve pulses
gene proagation
tumour
Potential Scenario
161
views
72
downloads
0
comments
2017-Guy-Bart_Stan-Modelling in Biology
This is a very rich set of notes, rich in examples and ideas for modeling. In almost all cases after a model is introduced in real context there is attention to stability analysis.
spring mass
bifurcation
mass action
limit cycles
Free Online Textbook
464
views
95
downloads
0
comments
2012-Brian_Ingalls-Mathematical Modelling in Systems Biology An Introduction
This is a comprehensive text with much biology background to motivate the mathematical modeling, exercises and answers, and many rich examples.
spatial
sensitivity analysis
gene regulatory networks
stochastic
bifurcation
metabolic networks
electrophysiology
transduction
rate laws
biochemical reactions
Free Online Textbook
211
views
83
downloads
0
comments
2018-Eduardo-Sontag-Lecture_Notes_on_Mathematical_Systems_Biology
I am often asked if it is OK to use these notes in courses at other universities. The answer is “of course!” though I strongly suggest that a link to my website be provided, so that students can always access the current version.
biology
textbook
systems
dyanmical system
Potential Scenario
279
views
98
downloads
0
comments
2006-Wilensky-Reisman-Thinking Like a Wolf a Sheep or a Firefly
We describe a computation-based approach that enables students to investigate the connections between different biological levels using agent-based, embodied modeling tools.
simulation
NetLogo
predator-prey
agent-based
wolf
fox
Potential Scenario
159
views
71
downloads
0
comments
1935 GFGause Article Predator Prey Oscillations
N/A
Lotka-Volterra
predator
paramecium
prey
cycle
oscillate
Potential Scenario
182
views
49
downloads
0
comments
2012-Transtrum-Qiu-Optimal experiment selection for parameter estimation in biological differential equation models
We explore the question to what extent parameters can be efficiently estimated by appropriate experimental selection.
experimental design
systems biology
Association & Data Fitting
reaction rates
decay rates
Potential Scenario
132
views
49
downloads
0
comments
2011-GA_Koch-Noble-Drugs in the Classroom Using Pharmacokinetics to Introduce Biomathematical Modeling
By beginning with simple model involving the half-life of a drug, students take advantage of their mathematical abilities to explore the biology.
Biomathematics
pharmacokinetics
Potential Scenario
294
views
47
downloads
0
comments
2018-Robert_Phair-Differential_equation_methods_for_simulation_of_GFP_kinetics_in_non–steady_state_experiments
Here, we derive new tracer kinetic analytical methods for non–steady state biological systems by constructing mechanistic nonlinear differential equation models of the underlying cell biological processes.
protein quality control
kinetics
Cells
steady state
chemical kinetics
fluouresence
photoactivation
inytracellular
Article or Presentation
128
views
33
downloads
0
comments
2002-Patrick_Nelson-Alan_Perelson-Mathematical_analysis_of_delay_differential _equation_models_of_HIV-1_infection
Models of HIV-1 infection that include intracellular delays are more accurate representations of the biology and change the estimated values of kinetic parameters when compared to models without delays.
delay
HIV-1
T cells
combination antiviral therapy
Potential Scenario
201
views
62
downloads
0
comments
2010-Jungck-EtAl-Mathematical Manipulative Models-In Defense of Beanbag Biology
This paper offers up samples of projects from the Bio- QUEST Curriculum Consortium’s 24-yr experience of holding faculty development workshops for biology and mathematics educators.
epidemiology
simulation
infectious disease
disease transmission
disease
in-class activity
bean bag activity
Potential Scenario
123
views
70
downloads
0
comments
2019-Fred_Brauer-The_Final_Size_of_a_Serious_Epidemic
In an epidemic of a serious disease, there is likely to be behavioral response that decreases the epidemic size considerably.
epidemic
final size
behavioral response
SIER model
relations
Potential Scenario
231
views
67
downloads
0
comments
2006-Graves-Peckham-Pastor-2D differential equations model for mutualism
We develop from basic principles a two-species differential equations model which exhibits mutualistic population interactions.
population dynamics
Lotka-Volterra
growth rate
mutualism
Lichen
Potential Scenario
158
views
51
downloads
0
comments
2018-Winkle-Igoshin-Bennett-Josic-Ott-Modeling_Mechanical_Interactions_in_Growing_Populations_of_Rod-Shaped_Bacteria
Here, we present an agent-based model that allows growing cells to detect and respond to mechanical interactions.
bacteria
agent-based
populationb
rod-shaped
cellular growth
Modeling Scenario
226
views
340
downloads
0
comments
6-019-EnablingEpidemicExploration-ModelingScenario
We became aware of several interesting possibilities for a modeling opportunity with data and we invited you to explore the several routes to parameter estimation in a SIR model with respect to the data offered.
Akaike Information Criterion
Michaelis-Menten
epidemic
saturation
gradient
least sum of square errors
Potential Scenario
244
views
85
downloads
0
comments
2017-Justin_Krueger-Parameter Estimation Methods for Ordinary Differential Equation Models with Applications to Microbiology
We demonstrate the feasibility of principal differential analysis using simulation studies and then apply the method to intestinal and vaginal microbiota data.
microbiology
Lotka Volterrra
microbiota
Potential Scenario
134
views
60
downloads
0
comments
2016-Barbarossa-Kuttler-Mathematical Modeling of Bacteria Communication in Continuous Cultures
This paper presents a simple system of delay differential equations (DDEs) for quorum sensing of Pseudomonas putida with one positive feedback plus one (delayed) negative feedback mechanism.
gene regulatory networks
chemostat
bifurcation
Numerical Simulation
quorum sensing
Potential Scenario
163
views
74
downloads
0
comments
2014-Michael_Monagan-The Mortgage Payment Problem Approximating a Discrete Process with a Differential Equation
In this article and a subsequent article I will give two non-standard examples that I've found helpful. The one presented here is a first order linear system. Second order systems and non-linear systems.
compartment
heating
house
Potential Scenario
187
views
61
downloads
0
comments
2011-Mandal-EtAl-Mathematical models of malaria
The first aim of this article is to develop, starting from the basic models, a hierarchical structure of a range of deterministic models of different levels of complexity. The second is to elaborate, using some of the representative mathematical...
epidemiology
transmission
host-parasite
malaria
Ross model
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