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Free Online Textbook
464
views
94
downloads
0
comments
2012-Brian_Ingalls-Mathematical Modelling in Systems Biology An Introduction
This is a comprehensive text with much biology background to motivate the mathematical modeling, exercises and answers, and many rich examples.
spatial
sensitivity analysis
gene regulatory networks
stochastic
bifurcation
metabolic networks
electrophysiology
transduction
rate laws
biochemical reactions
Free Online Textbook
210
views
83
downloads
0
comments
2018-Eduardo-Sontag-Lecture_Notes_on_Mathematical_Systems_Biology
I am often asked if it is OK to use these notes in courses at other universities. The answer is “of course!” though I strongly suggest that a link to my website be provided, so that students can always access the current version.
biology
textbook
systems
dyanmical system
Modeling Scenario
310
views
137
downloads
0
comments
1-104-InfectionRisk-ModelingScenario
This project is designed to examine differences between the exponential and logistic growth models in biology and how to apply these models in solving epidemic questions.
infection
logistic
exponential
covid
carrying capacity
Modeling Scenario
298
views
270
downloads
0
comments
1-098-NeuronDetection-ModelingScenario
Students study a linear, first order, one-dimensional ordinary differential equation (ODE) and learn how it can help understand basics of neural dynamics. The modeling framework is known in mathematical neuroscience as ``integrate-and-fire''...
biology
neuroscience
neuron physiology
voltage
integrate and fire
threfhols
coincidence detection
RC circuit
Potential Scenario
132
views
49
downloads
0
comments
2011-GA_Koch-Noble-Drugs in the Classroom Using Pharmacokinetics to Introduce Biomathematical Modeling
By beginning with simple model involving the half-life of a drug, students take advantage of their mathematical abilities to explore the biology.
Biomathematics
pharmacokinetics
Potential Scenario
293
views
47
downloads
0
comments
2018-Robert_Phair-Differential_equation_methods_for_simulation_of_GFP_kinetics_in_non–steady_state_experiments
Here, we derive new tracer kinetic analytical methods for non–steady state biological systems by constructing mechanistic nonlinear differential equation models of the underlying cell biological processes.
protein quality control
kinetics
Cells
steady state
chemical kinetics
fluouresence
photoactivation
inytracellular
Potential Scenario
163
views
74
downloads
0
comments
2014-Michael_Monagan-The Mortgage Payment Problem Approximating a Discrete Process with a Differential Equation
In this article and a subsequent article I will give two non-standard examples that I've found helpful. The one presented here is a first order linear system. Second order systems and non-linear systems.
compartment
heating
house
Modeling Scenario
335
views
149
downloads
0
comments
1-105-AnimalFall-ModelingScenario
This project uses Newton's Second Law of Motion to model a falling animal with a resistance term proportional to cross sectional area of the animal, presumed to be spherical in shape.
animal
Netwon's Second Law of Motion
falling body
terminal velocity
air resistance
Newton
air friction
fall
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