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    Potential Scenario
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    2015-G_Knott-Chemical Kinetics - Simple Binding F + G to and from B
    The study of this reaction, F + G goes to and from B, is common in chemistry and biochemistry. For example, F could be a hormone or drug and G the associated receptor sites.
    bindingreactionchemical kineticsdeterministicBiochem Labsprobabilistickinetic reaction
    Potential Scenario
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    2008-Claire_Vailance-Reaction_Kinetics-Course_Notes
    This is but one of several set of notes which may interest the reader on chemical kinetics.
    kineticsparametersrate constantchemical kineticsreactions
    Potential Scenario
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    2018-Robert_Phair-Differential_equation_methods_for_simulation_of_GFP_kinetics_in_non–steady_state_experiments
    Here, we derive new tracer kinetic analytical methods for non–steady state biological systems by constructing mechanistic nonlinear differential equation models of the underlying cell biological processes.
    protein quality controlkineticsCellssteady statechemical kineticsfluouresencephotoactivationinytracellular
    Modeling Scenario
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    5-010-DNADegradation-ModelingScenario
    We ask students to use the system of first order linear differential equations given in a source paper and estimates of the data from laboratory procedures from a plot to estimate the parameters and complete the modeling process.
    DNA\kinetisplasmaratpharmacokinetis
    Modeling Scenario
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    1-011A-Kinetics-ModelingScenario
    We help students see the connection between college level chemistry course work and their differential equations coursework. We do this through modeling kinetics, or rates of chemical reaction.
    kineticsLaw of Mass Actionfittingorder of reactionchemical reaction
    Modeling Scenario
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    1-005B-ChemDataCollection-ModelingScenario
    A chemistry graduate student is collecting data on a chemical reaction and does a poor job of collecting the data. Indeed, he only collects the data at the start and end of a number of three minute intervals and does not note the times.
    kineticslaboratoryorder of reactionchemical reactionchemical datainfusion
    Modeling Scenario
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    1-011-Kinetics-ModelingScenario
    We make the connection between chemistry course and differential equations coursework. We do this through modeling kinetics, or rates of chemical reaction. We study zeroth, first, and second order reactions.
    kineticschemistryLaw of Mass Actionchemical kineticsorder of reactionchemical reaction
    Modeling Scenario
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    3-010-EnergyInSpringMassSystem-ModlingScenario
    As a way to synthesize the effects of damping and forcing terms, this activity is meant to encourage students to explore how different forcing terms will change the total energy in a mass-spring system.
    energymass-spring systemkinetic energypotential energytotal energy
    Modeling Scenario
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    5-012-LipoproteinModeling-ModelingScenario
    Data from a study on the amounts of low-density-lipoprotein (LDL), form of cholesterol, in blood plasma is presented. Students build, validate, and use a compartment model of the kinetic exchange of the LDL between body tissue and blood plasma.
    wildlifelow-density-lipoproteintracercompartment modelcholesterolblood plasmabody tissue
    Modeling Scenario
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    5-036-HalfCarVibration-ModelingScenario
    Vibration vehicle models provide an opportunity to integrate vehicle-based vibrations into a mechanical engineering vibrations course. The project is on a multiple-degree-of-freedom (MDOF) including pitch and bounce of vehicle body on suspension...
    vibrationvehiclehalf-car modelfinite element analysisshock absorberssuspension
    Modeling Scenario
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    1-132-DigoxinElimination-ModelingScenario
    We model the concentration of digoxin eliminated from the human body at a rate proportional to the concentration. This is a ``first-order reaction'' in the language of pharmacokinetics -- the study of how drugs move in the body.
    nullclinespharmacokineticsdigoxindrug eliminationtwo compartment
    Modeling Scenario
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    1-131-CaffeineElimination-ModelingScenario
    We model the concentration of caffeine eliminated from the human body at a rate proportional to the concentration. This is a ``first-order reaction'' in the language of pharmacokinetics -- the study of how drugs move in the body.
    caffeineeliminationpharmacokineticsdrug
    Free Online Textbook
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    2012-Brian_Ingalls-Mathematical Modelling in Systems Biology An Introduction
    This is a comprehensive text with much biology background to motivate the mathematical modeling, exercises and answers, and many rich examples.
    spatialsensitivity analysisgene regulatory networksstochasticbifurcationmetabolic networkselectrophysiologytransductionrate lawsbiochemical reactions