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    2018-Eduardo-Sontag-Lecture_Notes_on_Mathematical_Systems_Biology
    I am often asked if it is OK to use these notes in courses at other universities. The answer is “of course!” though I strongly suggest that a link to my website be provided, so that students can always access the current version.
    biologytextbooksystemsdyanmical system
    Modeling Scenario
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    3-010-EnergyInSpringMassSystem-ModlingScenario
    As a way to synthesize the effects of damping and forcing terms, this activity is meant to encourage students to explore how different forcing terms will change the total energy in a mass-spring system.
    energymass-spring systemkinetic energypotential energytotal energy
    Modeling Scenario
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    3-110-MilitarySpringMassApplication-ModelingScenario
    The is a collection of different scenarios for the shock system of a trailer. In each scenario, students will transform the shock system of a trailer into a second-order differential equation, solve, and interpret the results.
    dampingresonancebeatsspring-mass systemLaplace TransfomDirac Delta function
    Modeling Scenario
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    7-011-CoupledSystemLaplace-ModelingScenario
    Differential equations and Laplace transforms are an integral part of control problems in engineering systems. We consider a baby warming device.
    transfer functionpolycarbonatebaby heatercoupled systemheating
    Modeling Scenario
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    3-072-EarthQuakePartI-ModelingScenario
    This modeling scenario considers a one-story building as a simple structure; the roof is modeled as a single point mass. Movement of the roof can be modeled similar to a mass-spring system.
    earthquakevibrationamplituderesonanceundampedspring-mass system
    Modeling Scenario
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    3-101-SpringMassFirstTry-NoResistance-ModelingScenario
    Students build a model based on their perceptions of what the solution should look like for a simple spring mass system with no damping.
    frequencymassoscillationundampedspring constantspring\Single Degree of Freedom System
    Modeling Scenario
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    3-102-SpringMassDamped-ModelingScenario
    Students build a model based on their perceptions of what the solution should look like for a simple spring mass system with damping.
    frequencymassoscillationstiffnessspring constantspring\dampedSingle Degree of Freedom Systemcoefficient
    Modeling Scenario
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    5-001-LSD-ModelingScenario
    We describe the use of a two compartment model of a linear system of first order linear differential equations to model lysergic acid diethylamide (LSD) in the body. We provide the data from the literature.
    LSDSpanishcompartmentpharmacokineticslysergic acid diethylamide
    Modeling Scenario
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    1-138-InnerEarDrugDelivery-ModelingScenario
    Students examine local drug delivery to the cochlea. The delivery system is modeled as a liquid mixing problem. Students formulate the differential equation, and solve the equation using separation of variables or integrating factor.
    concentrationdrug deliveryinner earcochleahearing loss
    Modeling Scenario
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    5-022-ColdPill-ModelingScenario
    A model for the flow of a cold pill drug through the gastrointestinal compartment to the bloodstream compartment of a human subject is proposed. Students solve the system of differential equation model, use known parameter values, and plot solutions.
    ratesmedicinedrug discoverycompartmentcold pillgastrointestinalbloodstream
    Modeling Scenario
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    5-040-TunedMassDamper-Part-I-Modeling Scenario
    We offer an opportunity to build mathematical models to mitigate dangerous displacements in structures using structural improvements called Tuned Mass Dampers. We model the motion of the original structure as a spring-mass-dashpot system.
    structurespring-mass-dashpotspring massearthquakevibrationtuned mass tunerrestoring forcecontroldampe
    Article or Presentation
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    SIMIODE Spring 2024 Webinars - Insightmaker
    We discuss the use of the FREE system dynamics software Insightmaker (https://insightmaker.com/) in a first course in Ordinary Differential Equations (with a modeling emphasis).
    modelingsimulationSoftwarepythonsystemsInsightMakerflowCategory Theorystockstock-flow
    Modeling Scenario
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    3-130-MatterOfSomeGravity-ModelingScenario
    This project introduces the concept of an inverse problem (or parameter estimation), in the context of the simple linearized pendulum ordinary differential equation.
    gravityinverse problemacceleration
    Potential Scenario
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    2017-GR_Gustafson-Differential Equations Course Materials
    There are many applications from compartment and cascade analysis, recycling brine tank, home heating with multiple rooms, chemostat, microbes, heartbeats, lidocaine, nutrient flow in an aquarium, biomass transfer, pesticides, forecasting prices,...
    chemostatmicrobesbiomassforecastingtransfercompartmentpesticidesearthquaketankheatinglidocainebrineheartbeatsnutrient flowaquariumelectric networkscircuitsloggingbuildingcascade
    Modeling Scenario
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    3-060-DataToDifferentialEquation-ModelingScenario
    Students use knowledge of second-order linear differential equations in conjunction with physical intuition of spring-mass systems to estimate the damping coefficient and spring constant from data.
    Association & Data Fittingmassspring-mass systemspring\total distancenumerical differentiation
    Modeling Scenario
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    3-073-EarthQuakePartII-ModelingScenario
    Your goal here is to determine how much friction/damping should be designed into a building to keep the roof from moving too far (which would result in the entire building collapsing) when it undergoes minor vibrations from a small earthquake.
    earthquakevibrationdampingamplitudespring-mass systemsteady-state solutionunderdamped
    Modeling Scenario
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    3-034-CarSuspension-ModelingScenario
    We examine the spring-mass-dashpot that is part of a car suspension, how the ride is related to parameter values, and the effect of changing the angle of installation. We model a ``quarter car'', meaning a single wheel.
    designspring-mass-dashpotspring constantunderdampingcar suspensionsuspension tolerancestatic equilibrium
    Modeling Scenario
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    1-190-IntroClass-ModelingScenario
    Students go through development of ideas in mathematical modeling with differential equations. They encounter fundamental ideas of unlimited population growth, limited population growth and a predator prey system.
    population dynamicspredator-preylogisticexponentialgraphical interpretationsqualitative analysis
    Modeling Scenario
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    3-001-SpringMassDataAnalysis-ModelingScenario
    We offer data on position of a mass at end of spring over time where the spring mass configuration has damping due to taped flat index cards at the bottom of the mass. Modeling of a spring mass configuration and estimation of parameters are the core.
    datadampingspring-mass systemNewton's Second Law of Motionspring constantHooke's Law
    Modeling Scenario
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    3-051-ProjectileMotions-ModelingScenario
    We consider several instances of projectile flight without resistance, one on level ground and one from edge of cliff to determine maximum distance and placement.
    trajectorylaunching radiantprojectile motionprojectileno resistanceangle of launch