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    Potential Scenario
    119

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    2008-Brewer-EtAl-Fitting ordinary differential equations to short time course data
    In this paper, we present a survey of existing algorithms and describe the main approaches. We also introduce and evaluate a new efficient technique for estimating ODEs linear in parameters particularly suited to situations where noise levels are...
    time seriesEvaluation SPLINEgeneleast squaresbifurcation
    Potential Scenario
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    2014-Wang-EtAl-Estimating Mixed-Effects Differential Equation Models
    When multiple replicates of measurements are available for the dynamic process, it is of great interest to estimate mixed-effects in the ODE model for the process. We propose a semiparametric method to estimate mixed-effects ODE models.
    pharmacokineticsdynamic modelssmoothingsplinemixed-effects modelsHiV combination therapy
    Potential Scenario
    165

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    69

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    2015-Zhang-EtAl-On the Selection of ODE Models with Application to Predator-Prey Dynamical Models
    We propose a computationally inexpensive approach that employs statistical estimation of the full model, followed by a combination of a least squares approximation (LSA) and the adaptive Lasso.
    least-squares approximationSpline modelingMonte Carlo simulationsvariable selectionadaptive LASSO
    Potential Scenario
    195

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    53

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    2016-Banks-EtAl-Modeling Bumble Bee Population Dynamics with Delay Differential Equations
    To provide a tool for projecting and testing sensitivity of growth of populations under contrasting and combined pressures, we propose a delay differential equation model that describes multi-colony bumble bee population dynamics.
    population modelReproductionspline approximationsBombus terrestrisneonicotinoidsbumble bee
    Modeling Scenario
    513

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    178

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    3-033-S-TimeUpTimeDown-ModelingScenario
    We seek to compare for the time a projectile takes to go vertically up with the time it takes to return to its starting position.
    projectile motionapexvertical motion
    Modeling Scenario
    314

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    472

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    1-065-AlgalBlooms-ModelingScenario
    This modeling scenario investigates the massive algal blooms that struck Lake Chapala, Mexico, starting in 1994.
    direction fieldstool:dfieldalgaeharmful algae bloomspopulationcompartmentLake Chapala
    General Resource
    1053

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    139

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    Instructor Solutions Second Edition SIMIODE Textbook HTML Version
    This is material we make available for instructors teaching a modeling-first approach to differential equations when using the Second Edition of SIMIODE Textbook, Differential Equations: A Toolbox for Modeling the Real World in HTML Version.
    textbookhtmlSIMIODE textbookSecond Edition
    Potential Scenario
    212

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    44

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    2012-Greer-Palin-Students in Differential Equations and Epidemiology Model a Campus Outbreak of pH1N1
    We describe a semester-long collaboration between a mathematics class and a biology class. Students worked together to understand and model the trajectory of the pandemic H1N1, pH1N1, outbreak across campus in fall 2009.
    H1N1pandemicspreadoutbreakpH1N1
    Article or Presentation
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    86

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    SIMIODE Spring 2024 Webinars - Insightmaker
    We discuss the use of the FREE system dynamics software Insightmaker (https://insightmaker.com/) in a first course in Ordinary Differential Equations (with a modeling emphasis).
    modelingsimulationSoftwarepythonsystemsInsightMakerflowCategory Theorystockstock-flow
    Article or Presentation
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    85

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    SIMIODE Spring 2024 Webinars - WikiModel
    WikiModel is cloud-based application and requires no installation and is run via a web-browser to facilitate rapid implementation. Equations are typed in as they appear in a textbook. ODEs are automatically integrated via Runge-Kutta methods.
    modelingSoftwaretoolapplicationWikiModelmodeling cycle
    Potential Scenario
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    43

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    2011-Teleken-EtAl-Mathematical modeling of microbial growth in milk
    A mathematical model to predict microbial growth in milk was developed and analyzed. The model consists of a system of two differential equations of first order. The equations are based on physical hypotheses of population growth.
    bacteriadairymilkfood safetymicrobilogy
    Potential Scenario
    140

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    45

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    2008-Huangi-Lu-Modeling long-term longitudinal HIV dynamics with applications to an AIDS clinical study 
    To better understand the factors responsible for the virological failure, this paper develops the mechanism-based nonlinear differential equation models for characterizing long-term viral dynamics with ARV therapy.
    longitudinal dataAIDSantiretroviral drug therapyBayesian nonlinear mixed-effectstime-varying drug efficacyHIV dynamics