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    2014-John_Cain-Chemical Reaction Kinetics Mathematical Underpinnings
    The usual way of deriving kinetic equations involves application of the principle of conservation of mass in conjunction with the law of mass action. Here, examples of kinetic models for several basic processes are discussed.
    kineticsbiochemical reactionreactantsproducts
    Potential Scenario
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    2004-Mitchell-von Meien-Krieger-Dalsenter-A review of recent developments in modeling of microbial growth kinetics
    Mathematical models are important tools for optimizing the design and operation of solid-state fermentation (SSF) bioreactors. Such models must describe the kinetics of microbial growth.
    Filamentous Fungisolid-state fermentationgrowth kineticsdiffusion-reactionoxygen transfer
    Potential Scenario
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    2017-Andras_Domokos-Differential Equations - Theory and Applications – Notes
    This is a terrific set of notes with models and applications woven into the material at every opportunity and data as well. This is introductory differential equations with attention to detail and motivation.
    Newton's Second Law of MotionNewton's Law of Coolingbiochemical reactionsPoiseuille’s Lawstopping distance
    Free Online Textbook
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    2012-Brian_Ingalls-Mathematical Modelling in Systems Biology An Introduction
    This is a comprehensive text with much biology background to motivate the mathematical modeling, exercises and answers, and many rich examples.
    spatialsensitivity analysisgene regulatory networksstochasticbifurcationmetabolic networkselectrophysiologytransductionrate lawsbiochemical reactions
    Potential Scenario
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    2016-Erno_Keszei-Chemical Kinetics for Beginners
    The most important goal of kinetic research is the identification and characterisation of elementary molecular events which make possible the transformation of reactants into products.
    kineticszeroth order reactionfirst order reactionsecond order reactionreaction ratesthird order reaction
    Potential Scenario
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    2015-G_Knott-Chemical Kinetics - Simple Binding F + G to and from B
    The study of this reaction, F + G goes to and from B, is common in chemistry and biochemistry. For example, F could be a hormone or drug and G the associated receptor sites.
    bindingreactionchemical kineticsdeterministicBiochem Labsprobabilistickinetic reaction
    Potential Scenario
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    1989-EY_Rodin-K_Egan-Mathematics modelling of the rate of chemical reactions
    The development of improved designs for chemical reactors as well as the prediction of optimal operating conditions in chemical production are based on an understanding of the rates at which chemical processes occur.
    kineticsfirst orderreactionsecond orderzeroth order
    Potential Scenario
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    2017-Helen-Byrne-Further Mathematics Biology
    These studies will be in the context of ecological, biological and biochemical applications.
    epidemicschemotaxisenzyme-substrateion channelsnerve pulsesgene proagationtumour
    Potential Scenario
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    2017-D_Goulet-Modeling, Simulating, and Parameter Fitting of Biochemical Kinetic Experiments
    In many chemical and biological applications, systems of differential equations containing unknown parameters are used to explain empirical observations and experimental data. The differential equations are typically nonlinear.
    optimizationBiochemistrysensitivity analysischromatographymass actioncluster analysisconservation lawsdimerizationestrogen receptor protein
    Potential Scenario
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    2010-Randy_Boucher-Determining Dissolved Oxygen Levels
    This is a full module given to students and the article contains comments for instructors as well.
    Environmental Engineeringbiochemical oxygen demandoxygen level
    Potential Scenario
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    2009-Chellaboina-EtAl-Modeling And Analysis-Mass Action Kinetics
    Mass-action kinetics are used in chemistry and chemical engineering to describe the dynamics of systems of reactions, that is, reaction networks. These models are a special form of compartmental systems, involving mass- and energy-balance relations.
    dynamical systemschemical reactionreaction networkmass action
    Potential Scenario
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    2010-Brian_Winkel-Parameter estimates in differential equation models for chemical kinetics
    We discuss the need for devoting time in differential equations courses to modelling and the completion of the modelling process with efforts to estimate the parameters in the models using data.
    kineticschemical kineticszeroth order reactionfirst order reactionsecond order reaction
    Modeling Scenario
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    1-011A-Kinetics-ModelingScenario
    We help students see the connection between college level chemistry course work and their differential equations coursework. We do this through modeling kinetics, or rates of chemical reaction.
    kineticsLaw of Mass Actionfittingorder of reactionchemical reaction
    Potential Scenario
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    2008-Fogler-etAl-Elements of Chemical Reaction Engineering  Strategies for Creative Problem Solving
    This is a website with lots of modeling information, exercises, and lessons.
    chemical reaction
    Modeling Scenario
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    1-005A-ChemDataCollection-ModelingScenario
    A student is assigned the task of collecting data on a chemical reaction and does a poor job of collecting data. She only collects data at the start and end of a number of ten minute intervals and does not keep track of when the observations are...
    linear regressionkineticschemistryorder of reactionchemical reactionchemical datainfusiondifferencing
    Modeling Scenario
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    1-005B-ChemDataCollection-ModelingScenario
    A chemistry graduate student is collecting data on a chemical reaction and does a poor job of collecting the data. Indeed, he only collects the data at the start and end of a number of three minute intervals and does not note the times.
    kineticslaboratoryorder of reactionchemical reactionchemical datainfusion
    Modeling Scenario
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    1-011-Kinetics-ModelingScenario
    We make the connection between chemistry course and differential equations coursework. We do this through modeling kinetics, or rates of chemical reaction. We study zeroth, first, and second order reactions.
    kineticschemistryLaw of Mass Actionchemical kineticsorder of reactionchemical reaction
    Potential Scenario
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    2010-Roberto_Munoz-Alicea-Mathematical Model for Enzyme Kinetics-Multiple Timescales Analysis
    We study a basic model for enzyme substrate reaction. Through several assumptions and via nondimensionalization, we simplify the equations.
    kineticsEnzymesubstratenondimensionalizationmultiple timescales
    Potential Scenario
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    2009-Peter-Howard-Modeling With ODE
    This is a set of class notes rich in examples and ideas for modeling. There is some MatLab code in support of some of the activities.
    ratescompetitionpopulationepidemicpendulumcarbon datingreaction chemistrymechanicsplanetary motiondrag racingHamilton’s methodvariational method
    Modeling Scenario
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    1-093-SucroseReaction-ModelingScenario
    We offer data on the hydrolysis of sucrose in the presence of catalyst sucrase. We present students with several models and ask which model is best. We ask students to estimate parameters for the best model.
    kineticsMichaelis-Mentenhydrolysisreactionsucrose