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    Modeling Scenario
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    6-070-BeerBubbles-ModelingScenario
    The goal of this project is to set up and numerically solve a first-order nonlinear ordinary differential equation (ODE) system of three equations in three unknowns that models beer bubbles that form at the bottom of a glass and rise to the top.
    molecular forensicsBEERspherebubbleNewton' Second LawIdeal Gas Lawdrag forceHadamardStokesmole
    Free Online Textbook
    464

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    95

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    2012-Brian_Ingalls-Mathematical Modelling in Systems Biology An Introduction
    This is a comprehensive text with much biology background to motivate the mathematical modeling, exercises and answers, and many rich examples.
    spatialsensitivity analysisgene regulatory networksstochasticbifurcationmetabolic networkselectrophysiologytransductionrate lawsbiochemical reactions
    Potential Scenario
    136

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    73

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    2016-Erno_Keszei-Chemical Kinetics for Beginners
    The most important goal of kinetic research is the identification and characterisation of elementary molecular events which make possible the transformation of reactants into products.
    kineticszeroth order reactionfirst order reactionsecond order reactionreaction ratesthird order reaction
    Potential Scenario
    211

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    26

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    2014-John_Cain-Chemical Reaction Kinetics Mathematical Underpinnings
    The usual way of deriving kinetic equations involves application of the principle of conservation of mass in conjunction with the law of mass action. Here, examples of kinetic models for several basic processes are discussed.
    kineticsbiochemical reactionreactantsproducts
    Potential Scenario
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    85

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    2014-Wrona-EtAl-Two-compartment model as a teaching tool for cholesterol homeostasis
    To investigate cholesterol transport in the circulatory system, we have previously developed a two-compartment mathematical model. Here, we show how this model can be used as a teaching tool for cholesterol homeostasis.
    metabolic syndromecompartment modelcholesterolhigh blood cholesterol
    Potential Scenario
    130

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    74

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    2015-Wrona-EtAl-Two-compartment model as a teaching tool for cholesterol homeostasis
    To investigate cholesterol transport in the circulatory system, we have previously developed a two-compartment mathematical model. Here, we show how this model can be used as a teaching tool for cholesterol homeostasis
    metabolic syndromecholesterolhigh blood cholesterolcholesterol homeostasis
    Potential Scenario
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    98

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    2006-Wilensky-Reisman-Thinking Like a Wolf a Sheep or a Firefly
    We describe a computation-based approach that enables students to investigate the connections between different biological levels using agent-based, embodied modeling tools.
    simulationNetLogopredator-preyagent-basedwolffox
    Potential Scenario
    275

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    54

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    2006-Juska-Gedminiene-Ivanec-Growth of Microbial Populations-Mathematical Modeling-Laboratory Exercises-Model-Based Data Analysis
    The aim is to teach the students to use a fresh approach to the problems they are familiar with, to come up with an articulate verbal model after a mental effort, to express it in rigorous mathematical terms, to solve (with the aid of computers).
    population growth ratelogistic equationVerhulst equationgeneration timelag time
    Potential Scenario
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    52

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    2019-Radulescu-Lundgren-A_pharmacokinetic_model_of_lead_absorption_and_calcium_competitive_dynamics
    We build and analyze a compartmental model of lead pharmacokinetics, focused specifically on addressing neurotoxicity.
    QUBES Leadership Teamparametersabsorptionbifurcationpharmacokineticscalciumcognitive decline