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    Technique Narrative
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    1-010-AtmosphericCO2Bifurcation-TechniqueNarrative
    Students are introduced to the concept of a bifurcation in a first-order ordinary differential equation (ODE) through a modeling scenario involving atmospheric carbon dioxide whish is taken as a parameter and temperature is a function of time.
    carbon dioxideSurface Atmosphere Exchangebifurcationfold bifurcationsaddle node
    Potential Scenario
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    2017-Suebcharoen-Analysis of a Predator-Prey Model with Switching and Stage-Structure for Predator
    This paper studies the behavior of a predator-prey model with switching and stage-structure for predator.
    stage structurepredatorpreybifurcationswitching
    Modeling Scenario
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    1-135-FishHarvesting-ModelingScenario
    This short activity will walk students through a guided list of questions to help them to understand how the stability of equilibrium changes with changes in a model parameter, in this case the rate of harvesting fish.
    population dynamicsfishstabilitybifurcationharvest
    Potential Scenario
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    2017-Guy-Bart_Stan-Modelling in Biology
    This is a very rich set of notes, rich in examples and ideas for modeling. In almost all cases after a model is introduced in real context there is attention to stability analysis.
    spring massbifurcationmass actionlimit cycles
    Potential Scenario
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    2006-Cooke-Elderkin-Huang-Predator-Prey interactions with delays due to juvenile maturation
    This paper focuses on predator-prey models with juvenile/mature class structure for each of the predator and prey populations in turn, further classified by whether juvenile or mature individuals are active with respect to the predation process.
    predator-preyhost-parasitebifurcationage structrematuration delay
    Potential Scenario
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    2014-Brun-EtAl-An introduction to the mechanics of the lasso
    Here, we study the mechanics of the simplest rope trick, the Flat Loop, in which the rope is driven by the steady circular motion of the roper’s hand in a horizontal plane.
    bifurcationmotionlassorod modelrodeo
    Potential Scenario
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    2014-Allen-EtAl-Perturbations in Epidemiological Models -When zombies attack we can survive
    In this paper, we investigate the existence of stability-changing bifurcations in epidemiological models used to study the spread of zombiism through a human population.
    epidemiologydynamical systemszombiesbifurcationperturbation
    Potential Scenario
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    2008-Yang-EtAl-Differential Equation Model of HIV Infection of CD T-Cells with Delay 
    Abstract: An epidemic model of HIV infection of CD4+ T-cells with cure rate and delay is studied. We include a baseline ODE version of the model, and a differential-delay model with a discrete time delay.
    virusT cellsHopf bifurcationendemic equilibrium
    Modeling Scenario
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    1-143-PopulationModelVariationsMATLAB-ModelingScenario
    Students will walk through a detailed derivation and review of basic population models (exponential and logistic) to create and understand variations of those models.
    population dynamicsecologylogistic growthbifurcation theoryslope fieldsextinctionharvestingqualitative analysisstocking
    Potential Scenario
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    80

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    2011-Nakul-Chitnis-Introduction to Mathematical Epidemiology - Deterministic Compartmental Model
    Deterministic compartmental models form the simplest models in the mathematical study of infectious disease dynamics. They assume that a population is homogenous (all people are the same) and the only distinction is in their disease state.
    sensitivitydiseaseinfectionthresholdcompartmentbifrucation
    Potential Scenario
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    2003-Yildirim-Mackey-Feedback Regulation in the Lactose Operon
    A mathematical model for the regulation of induction in the lac operon in Escherichia coli is presented.
    mRNAlactoselactose operonfeedback regulation
    Free Online Textbook
    162

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    2014-Andre_De Ross-Modeling Population Dynamics
    This course is intended as an introduction to the formulation, analysis and application of mathematical models that describe the dynamics of biological populations.
    predator-preycompetitionpopulationgrowthbifrucationtext
    Free Online Textbook
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    2016-Rob_deBoer-Population Dynamics  A Graphical Approach
    This book is an introduction into modeling population dynamics in ecology. Because there are several good textbooks on this subject, the book needs a novel ecological niche to justify its existence.
    mathematical modelstabilitycompetitionSIRbifurcationconsumptionpopulation population dynamicsgeneral replicationnonlinear density dependenciesfunctional responsepersistencephase plan analysis
    Free Online Textbook
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    2015-H_Sayama-Intro to Modeling and Analysis of Complex Systems
    Introduces students to mathematical/computational modeling and analysis developed in the emerging interdisciplinary field of Complex Systems Science.
    textbooktext