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    Potential Scenario
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    2012-Campbell-EtAl-Parameter estimation in differential equation models with constrained states
    We introduce a method to estimate parameters and states from a differential equation model while enforcing interpretability constraints such as monotone or non‐negative states.
    chemical engineeringsmoothing-based relaxation method
    Modeling Scenario
    234

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    1-093-SucroseReaction-ModelingScenario
    We offer data on the hydrolysis of sucrose in the presence of catalyst sucrase. We present students with several models and ask which model is best. We ask students to estimate parameters for the best model.
    kineticsMichaelis-Mentenhydrolysisreactionsucrose
    Potential Scenario
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    2010-Brian_Winkel-Parameter estimates in differential equation models for chemical kinetics
    We discuss the need for devoting time in differential equations courses to modelling and the completion of the modelling process with efforts to estimate the parameters in the models using data.
    kineticschemical kineticszeroth order reactionfirst order reactionsecond order reaction
    Potential Scenario
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    2017-D_Goulet-Modeling, Simulating, and Parameter Fitting of Biochemical Kinetic Experiments
    In many chemical and biological applications, systems of differential equations containing unknown parameters are used to explain empirical observations and experimental data. The differential equations are typically nonlinear.
    optimizationBiochemistrysensitivity analysischromatographymass actioncluster analysisconservation lawsdimerizationestrogen receptor protein
    Article or Presentation
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    70

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    2011-Brian_Winkel-Parameter_Estimates_in_Differential_Equation_Models_for_Chemical_Kinetics
    We estimate the parameters present in several differential equation models of chemical kinetics and logistic growth.
    kineticsparameter estimationlogisticchemical kineticschemical reaction
    Potential Scenario
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    2019-Radulescu-Lundgren-A_pharmacokinetic_model_of_lead_absorption_and_calcium_competitive_dynamics
    We build and analyze a compartmental model of lead pharmacokinetics, focused specifically on addressing neurotoxicity.
    QUBES Leadership Teamparametersabsorptionbifurcationpharmacokineticscalciumcognitive decline
    Modeling Scenario
    298

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    179

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    5-010-DNADegradation-ModelingScenario
    We ask students to use the system of first order linear differential equations given in a source paper and estimates of the data from laboratory procedures from a plot to estimate the parameters and complete the modeling process.
    DNA\kinetisplasmaratpharmacokinetis
    Potential Scenario
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    1967-JG-Wagner-Computers in pharmacokinetics
    This is a seminal paper in pharmacokinetics in which the author introduces historic notions and approaches. As can be seen from the abstract there is a variety of material here.
    kineticscomputerspharmacokinetics
    Potential Scenario
    160

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    1969-Carl_Metzler-A mathematical model for the pharmacokinetics of LSD effect
    Contains data on performance scores vs. plasma levels of LSD in human tissues.
    LSDtestingpharmacokineticsperformanceplasma level
    Potential Scenario
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    2017-GR_Gustafson-Differential Equations Course Materials
    There are many applications from compartment and cascade analysis, recycling brine tank, home heating with multiple rooms, chemostat, microbes, heartbeats, lidocaine, nutrient flow in an aquarium, biomass transfer, pesticides, forecasting prices,...
    chemostatmicrobesbiomassforecastingtransfercompartmentpesticidesearthquaketankheatinglidocainebrineheartbeatsnutrient flowaquariumelectric networkscircuitsloggingbuildingcascade
    Potential Scenario
    210

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    66

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    2007-Helfgott-Seier-Some Mathematical and Statistical Aspects of Enzyme Kinetics
    We will analyze some basic ideas behind enzyme kinetics, which allow us to deal with separable and linear differential equations as well as realize the need to use power series.
    kineticsEnzymeexperimental dataregresion
    Potential Scenario
    307

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    54

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    1976-JG-Wagner-Computers in pharmacokinetics
    This is a seminal paper in pharmacokinetics in which the author introduces historic notions and approaches. As can be seen from the abstract there is a variety of material here.
    kineticscomputerparametersPharmacologydrugspharmacokinetics
    Potential Scenario
    295

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    51

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    2008-Claire_Vailance-Reaction_Kinetics-Course_Notes
    This is but one of several set of notes which may interest the reader on chemical kinetics.
    kineticsparametersrate constantchemical kineticsreactions
    Modeling Scenario
    209

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    242

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    5-020-ParacetamolAbsorption-ModelingScenario
    We offer drug absorption data on paracetamol, an analgesic pain reliever, for two different sets of patients, vegetarian and non-vegetarian. Students build a two compartment model for plasma and non-plasma (tissue) compartments of human patients.
    paracetamolanalgesicvegetariannon-vegetarian
    Potential Scenario
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    69

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    2017-William_Bialek-Boxes and Arrows To Differential Equations
    This material uses pictures to build kinetic models of reactions and then offers analytic solutions.
    Michaelis-MentenEnzymesubstrateDNA\kinetis
    Potential Scenario
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    83

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    2017-Jean-Roux-Mathematical Models in Air Quality Problems
    Presents many models with analysis in air quality control. Starts with chemical kinetics models and builds complexity to PDE models.
    air pollution effects on forest ecosystemsfinite volume methodboundary layerchemical kineticsfinite differenceemissionsdepositionsadvection
    Potential Scenario
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    2017-Floyd_Ballard-Dice Activities for DE Models
    This document includes descriptions of four activities that are appropriate for a calculus or differential equations class, all using dice to motivate a differential equation model for a real-world scenario.
    simulationcurve fittingcdicecollect dataclass activitiesanalyze dataclass activity
    Potential Scenario
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    2015-G_Knott-Chemical Kinetics - Simple Binding F + G to and from B
    The study of this reaction, F + G goes to and from B, is common in chemistry and biochemistry. For example, F could be a hormone or drug and G the associated receptor sites.
    bindingreactionchemical kineticsdeterministicBiochem Labsprobabilistickinetic reaction
    Potential Scenario
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    2010-Roberto_Munoz-Alicea-Mathematical Model for Enzyme Kinetics-Multiple Timescales Analysis
    We study a basic model for enzyme substrate reaction. Through several assumptions and via nondimensionalization, we simplify the equations.
    kineticsEnzymesubstratenondimensionalizationmultiple timescales
    Potential Scenario
    165

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    2008-Fogler-etAl-Elements of Chemical Reaction Engineering  Strategies for Creative Problem Solving
    This is a website with lots of modeling information, exercises, and lessons.
    chemical reaction