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Downloads
Views
Date
Relevance
Article or Presentation
508
views
102
downloads
0
comments
2007-John_Jungck-Ten_Equations_that_Changed_Biology-Mathematics_in_Problem-Solving_Biology_Curricula The author
These equations were selected upon the basis of wide-spread recognition of the value of the models.
biology
equations
ten equations
Potential Scenario
148
views
81
downloads
0
comments
2015-The European Bioinformatics Institute-BioModels Database
BioModels Database is a repository of computational models of biological processes. Models described from literature are manually curated and enriched with cross-references.
computational biology
BioModels Database
bio database
life science experiments
Potential Scenario
219
views
46
downloads
0
comments
2012-Greer-Palin-Students in Differential Equations and Epidemiology Model a Campus Outbreak of pH1N1
We describe a semester-long collaboration between a mathematics class and a biology class. Students worked together to understand and model the trajectory of the pandemic H1N1, pH1N1, outbreak across campus in fall 2009.
H1N1
pandemic
spread
outbreak
pH1N1
Potential Scenario
177
views
45
downloads
0
comments
2017-Helen-Byrne-Further Mathematics Biology
These studies will be in the context of ecological, biological and biochemical applications.
epidemics
chemotaxis
enzyme-substrate
ion channels
nerve pulses
gene proagation
tumour
Modeling Scenario
549
views
279
downloads
0
comments
1-104A-T-InfectionRisk-ModelingScenario
This project is designed to examine differences between the exponential and logistic growth models in biology and how to apply these models in solving epidemic questions and comparing to actual disease data sets.
regression
infection
COVID19
carrying capacity
logistic equation
exponential model
Free Online Textbook
467
views
98
downloads
0
comments
2012-Brian_Ingalls-Mathematical Modelling in Systems Biology An Introduction
This is a comprehensive text with much biology background to motivate the mathematical modeling, exercises and answers, and many rich examples.
spatial
sensitivity analysis
gene regulatory networks
stochastic
bifurcation
metabolic networks
electrophysiology
transduction
rate laws
biochemical reactions
Free Online Textbook
167
views
83
downloads
0
comments
2014-Jeffrey_Chasnov-Lecture_Notes_on_Introduction_to_Differential_Equations
The differential equations text is 128 pages and develops and motivates the theory of the material nicely, with links to YouTube lectures to assist.
differential equations
biology
textbook
General Resource
203
views
48
downloads
0
comments
2003-Knorrenschild-Gross-Text Books on Mathematical Modeling in Biology
Text Books on Mathematical Modeling in Biology Compiled from the Internet by Michael Knorrenschild,
biology
Mathematical Biology
textbook
text
Free Online Textbook
211
views
84
downloads
0
comments
2018-Eduardo-Sontag-Lecture_Notes_on_Mathematical_Systems_Biology
I am often asked if it is OK to use these notes in courses at other universities. The answer is “of course!” though I strongly suggest that a link to my website be provided, so that students can always access the current version.
biology
textbook
systems
dyanmical system
Modeling Scenario
312
views
139
downloads
0
comments
1-104-InfectionRisk-ModelingScenario
This project is designed to examine differences between the exponential and logistic growth models in biology and how to apply these models in solving epidemic questions.
infection
logistic
exponential
covid
carrying capacity
Potential Scenario
119
views
53
downloads
0
comments
2008-Brewer-EtAl-Fitting ordinary differential equations to short time course data
In this paper, we present a survey of existing algorithms and describe the main approaches. We also introduce and evaluate a new efficient technique for estimating ODEs linear in parameters particularly suited to situations where noise levels are...
time series
Evaluation SPLINE
gene
least squares
bifurcation
Potential Scenario
280
views
98
downloads
0
comments
2006-Wilensky-Reisman-Thinking Like a Wolf a Sheep or a Firefly
We describe a computation-based approach that enables students to investigate the connections between different biological levels using agent-based, embodied modeling tools.
simulation
NetLogo
predator-prey
agent-based
wolf
fox
Potential Scenario
282
views
54
downloads
0
comments
2006-Juska-Gedminiene-Ivanec-Growth of Microbial Populations-Mathematical Modeling-Laboratory Exercises-Model-Based Data Analysis
The aim is to teach the students to use a fresh approach to the problems they are familiar with, to come up with an articulate verbal model after a mental effort, to express it in rigorous mathematical terms, to solve (with the aid of computers).
population growth rate
logistic equation
Verhulst equation
generation time
lag time
Potential Scenario
181
views
75
downloads
0
comments
2007-I-Liang_Chern-Mathematical Modeling and Differential Equations
In this course, I will mainly focus on, but not limited to, two important classes of mathematical models by ordinary differential equations: • population dynamics in biology • dynamics in classical mechanics.
population dynamics
ecology
dynamics
classical mechanics
chemical reaction
Potential Scenario
162
views
71
downloads
0
comments
1935 GFGause Article Predator Prey Oscillations
N/A
Lotka-Volterra
predator
paramecium
prey
cycle
oscillate
Potential Scenario
190
views
45
downloads
0
comments
2013-Alicia_Caldwell-Students Rise to the Challenge of Modeling Yeast Growth Despite Sour Hiccups from Imperfect Data
This paper describes a lab in which students in an Applied Mathematics in Biology course observe the growth of Saccharomyces cerevisiae, a yeast strain, in differing sugar concentrations for use in learning modeling.
Saccharomyces cerevisiae
logistic
yeast
death
growth
sugar
alcohol
Potential Scenario
138
views
42
downloads
0
comments
1998-K_H_Louie_Clark-P_C_D_Newton-Analysis of differential equation models in biology-clover meristem populations
A simple differential equation model (dynamical system) for clover, based on meristem numbers, is outlined and analysed mathematically.
sensitivity analysis
stability analysis
steady states
growing points
buds
meristems
Modeling Scenario
300
views
272
downloads
0
comments
1-098-NeuronDetection-ModelingScenario
Students study a linear, first order, one-dimensional ordinary differential equation (ODE) and learn how it can help understand basics of neural dynamics. The modeling framework is known in mathematical neuroscience as ``integrate-and-fire''...
biology
neuroscience
neuron physiology
voltage
integrate and fire
threfhols
coincidence detection
RC circuit
Article or Presentation
170
views
88
downloads
0
comments
2015-European_Bioinformatics_Institute-Bio-Models-Database
Bio Models Database is a repository of computational models of biological processes. Models described from literature are manually curated and enriched with cross-references. All models are provided in the Public Domain.
biology
database
bioinformatics
Models
computational models
Potential Scenario
182
views
49
downloads
0
comments
2012-Transtrum-Qiu-Optimal experiment selection for parameter estimation in biological differential equation models
We explore the question to what extent parameters can be efficiently estimated by appropriate experimental selection.
experimental design
systems biology
Association & Data Fitting
reaction rates
decay rates
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