Skip to Main Content
Powered by QUBES

Resources

Text Search:
Applied Filters
    Free Online Textbook
    148

    views

    51

    downloads

    0

    comments

    2012-Brian_Ingalls-Mathematical_Modelling_in_Systems_Biology
    This text provides an introduction to dynamic mathematical modeling of cellular processes. The emphasis is on using computational tools to investigate models of cellular phenomena.
    biologygene regulatory networksModelsmetabolic networkssignal transduction pathwayselectrophysiology
    Potential Scenario
    211

    views

    26

    downloads

    0

    comments

    2014-John_Cain-Chemical Reaction Kinetics Mathematical Underpinnings
    The usual way of deriving kinetic equations involves application of the principle of conservation of mass in conjunction with the law of mass action. Here, examples of kinetic models for several basic processes are discussed.
    kineticsbiochemical reactionreactantsproducts
    Free Online Textbook
    464

    views

    95

    downloads

    0

    comments

    2012-Brian_Ingalls-Mathematical Modelling in Systems Biology An Introduction
    This is a comprehensive text with much biology background to motivate the mathematical modeling, exercises and answers, and many rich examples.
    spatialsensitivity analysisgene regulatory networksstochasticbifurcationmetabolic networkselectrophysiologytransductionrate lawsbiochemical reactions
    Potential Scenario
    146

    views

    92

    downloads

    0

    comments

    2017-Alex_Honchar-Neural Networks For Solving Differential Equations
    In this post I want to show how I applied simple feed-forward NNs to different differential equations with increasing complexity: ODEs, second order ODEs, and, finally, PDEs.
    neural networksCybenko theoremdiffusion equationfluid dynamics
    Potential Scenario
    137

    views

    55

    downloads

    0

    comments

    2008-Abramson-Mathematical modeling of the spread of infectious diseases
    These are informal notes, mostly based on the bibliography listed at the end and on recent papers in the field. The practical use of these models is based on the fact that they can be kept realistic enough.
    infectious diseasebibliographyepidemiccowpoxsmallpoxcomplex networksspread disease
    Potential Scenario
    134

    views

    46

    downloads

    0

    comments

    2008-Abramson-Mathematical modeling of the spread of infectious diseases
    These are informal notes, mostly based on the bibliography listed at the end and on recent papers in the field. The practical use of these models is based on the fact that they can be kept realistic enough.
    infectious diseaseepidemiccowpoxsmallpoxcomplex networks
    Potential Scenario
    144

    views

    85

    downloads

    0

    comments

    2014-Wrona-EtAl-Two-compartment model as a teaching tool for cholesterol homeostasis
    To investigate cholesterol transport in the circulatory system, we have previously developed a two-compartment mathematical model. Here, we show how this model can be used as a teaching tool for cholesterol homeostasis.
    metabolic syndromecompartment modelcholesterolhigh blood cholesterol
    Potential Scenario
    130

    views

    74

    downloads

    0

    comments

    2015-Wrona-EtAl-Two-compartment model as a teaching tool for cholesterol homeostasis
    To investigate cholesterol transport in the circulatory system, we have previously developed a two-compartment mathematical model. Here, we show how this model can be used as a teaching tool for cholesterol homeostasis
    metabolic syndromecholesterolhigh blood cholesterolcholesterol homeostasis
    Potential Scenario
    142

    views

    90

    downloads

    0

    comments

    2014-Hrydziuszko-EtAl-Mathematical Two-compartment Model of Human Cholesterol Transport
    We develop a two-compartment mathematical model to investigate cholesterol transport in the circulatory system and its de novo synthesis in the liver.
    metabolic syndromecompartmentcholesteroltwo-compartment modelcholesterol transport
    Potential Scenario
    203

    views

    72

    downloads

    0

    comments

    2017-GR_Gustafson-Differential Equations Course Materials
    There are many applications from compartment and cascade analysis, recycling brine tank, home heating with multiple rooms, chemostat, microbes, heartbeats, lidocaine, nutrient flow in an aquarium, biomass transfer, pesticides, forecasting prices,...
    chemostatmicrobesbiomassforecastingtransfercompartmentpesticidesearthquaketankheatinglidocainebrineheartbeatsnutrient flowaquariumelectric networkscircuitsloggingbuildingcascade
    Potential Scenario
    134

    views

    60

    downloads

    0

    comments

    2016-Barbarossa-Kuttler-Mathematical Modeling of Bacteria Communication in Continuous Cultures
    This paper presents a simple system of delay differential equations (DDEs) for quorum sensing of Pseudomonas putida with one positive feedback plus one (delayed) negative feedback mechanism.
    gene regulatory networkschemostatbifurcationNumerical Simulationquorum sensing
    Potential Scenario
    128

    views

    48

    downloads

    0

    comments

    2010-Shianga-EtAl-Computational model of the human glucose-insulin regulatory system
    A computational model of insulin secretion and glucose metabolism for assisting the diagnosis of diabetes mellitus in clinical research is introduced. The
    glucose tolerance testsum of squared residualsmultiple shooting methodcost function
    Potential Scenario
    182

    views

    49

    downloads

    0

    comments

    2009-Chellaboina-EtAl-Modeling And Analysis-Mass Action Kinetics
    Mass-action kinetics are used in chemistry and chemical engineering to describe the dynamics of systems of reactions, that is, reaction networks. These models are a special form of compartmental systems, involving mass- and energy-balance relations.
    dynamical systemschemical reactionreaction networkmass action
    Free Online Textbook
    142

    views

    66

    downloads

    0

    comments

    2015-H_Sayama-Intro to Modeling and Analysis of Complex Systems
    Introduces students to mathematical/computational modeling and analysis developed in the emerging interdisciplinary field of Complex Systems Science.
    textbooktext
    Potential Scenario
    151

    views

    95

    downloads

    0

    comments

    2014-John_Cimbala-Dynamic System Response
    In this learning module, we discuss the dynamic system response of sensors and their associated electronic circuits.
    sensor networksoscillationssystem responseelectronic circuit
    Potential Scenario
    103

    views

    38

    downloads

    0

    comments

    2012-Shargel-Yu-AccessPharmacy-Applied Biopharmaceutics and Pharmacokinetics
    Step by step formation of drug absorption models is shown with many good graphics of system and plots. Solutions are offered but no solution methods are shown.
    Michaelis-MentenEnzymesubstratecompartmentpharmacokineticsrate constanturinary dataabsorption rate
    Potential Scenario
    182

    views

    49

    downloads

    0

    comments

    2012-Transtrum-Qiu-Optimal experiment selection for parameter estimation in biological differential equation models
    We explore the question to what extent parameters can be efficiently estimated by appropriate experimental selection.
    experimental designsystems biologyAssociation & Data Fittingreaction ratesdecay rates