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    Modeling Scenario
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    1-076-ClimateBifurcation-ModelingScenario
    We cover simple zero and one dimensional models for the mean temperature of the Earth. These models can exhibit bifurcations.
    energy balanceclimateenergyalbedoHysteresisbifurcationice-agegreenhousebalanceStefan Boltzmann Law
    Modeling Scenario
    453

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    180

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    1-039-StochasticPopModels-ModelingScenario
    We develop strategies for creating a population model using some simple probabilistic assumptions. These assumptions lead to a system of differential equations for the probability that a system is in state (or population size) n at time t.
    Probabilitypopulation dynamicsVarianceMeanstochasticdeterministic
    Potential Scenario
    222

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    51

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    1999-Khorasheh-Ahmadi-Gerayeli-Application of Direct Search Optimization for Pharmacokinetic Parameter Estimation
    For simple pharmacokinetic compartmental models, analytical solution to the governing differential equations provide a mean to evaluate the associated rate constants. Such methods, however, can not be used used for more complex multi-compartment...
    sum of square errorsleast squarespharmacokineticslineteicscompartmental modelsdirect search
    Potential Scenario
    167

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    93

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    2014-Rogert_Smith-Mathematical Modeling of Zombies
    Here, we use diffusion to model the zombie population shuffling randomly over a one-dimensional domain.
    kineticsZombiezombificationinteraction times
    Potential Scenario
    201

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    54

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    2009-Shamim-EtAl-Investigating viscous damping using a webcam
    We describe an experiment involving a mass oscillating in a viscous fluid and analyze overdamped, critically damped and underdamped regimes of harmonic motion.
    laboratoryunderdampedoverdampedcritically dampedharmonic motionimage processingviscous fluid
    Modeling Scenario
    294

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    278

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    1-114-EarthClimate-ModelingScenario
    In this modeling scenario, we investigate the Earth's climate using a zero-dimensional energy balance model. Energy balance models are climate models that try to predict the average surface temperature of the Earth.
    climateenergytemperaturelinearizationphase linesenergy balance modelroot finding
    Potential Scenario
    137

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    55

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    2008-Abramson-Mathematical modeling of the spread of infectious diseases
    These are informal notes, mostly based on the bibliography listed at the end and on recent papers in the field. The practical use of these models is based on the fact that they can be kept realistic enough.
    infectious diseasebibliographyepidemiccowpoxsmallpoxcomplex networksspread disease
    Potential Scenario
    182

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    80

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    2011-Nakul-Chitnis-Introduction to Mathematical Epidemiology - Deterministic Compartmental Model
    Deterministic compartmental models form the simplest models in the mathematical study of infectious disease dynamics. They assume that a population is homogenous (all people are the same) and the only distinction is in their disease state.
    sensitivitydiseaseinfectionthresholdcompartmentbifrucation
    Potential Scenario
    129

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    39

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    2009-Marten-EtAl-Derivation and analysis of an ordinary differential equation for epilepsy dynamics
    In this paper we describe how an ordinary differential equation model of corticothalamic interactions may be obtained from a more general system of delay differential equations.
    delayepilepsy dynamicsepilepsybistabilityseizure activity
    Potential Scenario
    134

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    46

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    2008-Abramson-Mathematical modeling of the spread of infectious diseases
    These are informal notes, mostly based on the bibliography listed at the end and on recent papers in the field. The practical use of these models is based on the fact that they can be kept realistic enough.
    infectious diseaseepidemiccowpoxsmallpoxcomplex networks
    Article or Presentation
    162

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    54

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    0

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    2009-Agnes_Rash-Brian_Winkel-Birth_and_Death_Process_Modeling_Leads_to_the_Poisson_Distribution
    In this paper there are details of development of the general birth and death process from which we can extract the Poisson process as a special case.
    ProbabilityMeanPoisson processbirth and death processinfinite number of differential equations
    Potential Scenario
    160

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    83

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    2009-Su-EtAl-Fitting Compartmental Models to Multiple Dose Pharmacokinetic Data using SAS
    In the case of a multiple dose study where subjects experience different dosing times, a superposition principle can be used to recursively account for each additional dose.
    SASsuperpositionpharmacokineticscompartmental modelsmultiple dose
    Article or Presentation
    187

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    82

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    1979-Brian_Winkel-Elementary_My_Dear_Watson_Differential_Equation
    Sherlock Homes explains to Doctor Watson how he solves a murdermystery using Newton's Law of Cooling.
    Newton's Law of CoolingSherlock Holmestime of detah
    Modeling Scenario
    251

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    183

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    1-057-FiguringFluidFlow-ModelingScenario
    We propose three differential equations models for the height of a column of falling water as the water exits a small bore hole at the bottom of the cylinder and ask students to determine which model is the best of the three.
    dischargetankTorricelli's LawConservation of Energyfluid flowheightliquid
    Modeling Scenario
    306

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    232

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    1-027-StochasticProcesses-ModelingScenario
    We build the infinite set of first order differential equations for modeling a stochastic process, the so-called birth and death equations. We will only need to use integrating factor solution strategy or DSolve in Mathematica for success.
    VarianceMeanstochasticrandomoperations researchindustrial engineeringPoisson processtraffic
    Potential Scenario
    161

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    68

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    1972-R_C_Rothermel-A Mathematical Model for Predicting Fire Spread in Wildland Fuels
    The development of a mathematical model for predicting rate of fire spread and intensity applicable to a wide range of wildland fuels is presented from the conceptual stage through evaluation and demonstration of results to hypothetical fuel models.
    predictionforest firefire managementfire spreadfuel
    Article or Presentation
    167

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    86

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    2015-European_Bioinformatics_Institute-Bio-Models-Database
    Bio Models Database is a repository of computational models of biological processes. Models described from literature are manually curated and enriched with cross-references. All models are provided in the Public Domain.
    biologydatabasebioinformaticsModelscomputational models
    Free Online Textbook
    464

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    94

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    2012-Brian_Ingalls-Mathematical Modelling in Systems Biology An Introduction
    This is a comprehensive text with much biology background to motivate the mathematical modeling, exercises and answers, and many rich examples.
    spatialsensitivity analysisgene regulatory networksstochasticbifurcationmetabolic networkselectrophysiologytransductionrate lawsbiochemical reactions