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Downloads
Views
Date
Relevance
Potential Scenario
141
views
60
downloads
0
comments
2015-Zhang-EtAl-On the Selection of ODE Models with Application to Predator-Prey Dynamical Models
We propose a computationally inexpensive approach that employs statistical estimation of the full model, followed by a combination of a least squares approximation (LSA) and the adaptive Lasso.
least-squares approximation
Spline modeling
Monte Carlo simulations
variable selection
adaptive LASSO
Modeling Scenario
212
views
327
downloads
0
comments
3-090-OneSpringMass-ModelingScenario
We lead students through building a mathematical model for a single mass (bob)-spring system that is hanging vertically. We also lead the students, using data that they collect together with their model to approximate the value of the spring...
undamped
sum of square errors
mass spring
Hooke's Law
oscilation
least-squares approximation
Potential Scenario
116
views
46
downloads
0
comments
1975-Rodda-Sampson-Smith-The One-Compartment Open Model Parameter Estimation
A new estimation procedure is proposed for estimating the parameters of the simplest pharmacokinetic model, the one-compartment open model.
compartment model
pharmacokinetics
nonlinear estimation
one compartment model
Potential Scenario
183
views
42
downloads
0
comments
1999-Khorasheh-Ahmadi-Gerayeli-Application of Direct Search Optimization for Pharmacokinetic Parameter Estimation
For simple pharmacokinetic compartmental models, analytical solution to the governing differential equations provide a mean to evaluate the associated rate constants. Such methods, however, can not be used used for more complex multi-compartment...
sum of square errors
least squares
pharmacokinetics
lineteics
compartmental models
direct search
Potential Scenario
210
views
62
downloads
0
comments
2017-Justin_Krueger-Parameter Estimation Methods for Ordinary Differential Equation Models with Applications to Microbiology
We demonstrate the feasibility of principal differential analysis using simulation studies and then apply the method to intestinal and vaginal microbiota data.
microbiology
Lotka Volterrra
microbiota
Potential Scenario
97
views
37
downloads
0
comments
2008-Brewer-EtAl-Fitting ordinary differential equations to short time course data
In this paper, we present a survey of existing algorithms and describe the main approaches. We also introduce and evaluate a new efficient technique for estimating ODEs linear in parameters particularly suited to situations where noise levels are...
time series
Evaluation SPLINE
gene
least squares
bifurcation
Modeling Scenario
214
views
158
downloads
0
comments
1-066-USCensusModeling-ModelingScenario
The United States Census, conducted every 10 years, gives data on the United States population, that can be modeled with the exponential, logistic, or Gompertz functions.
data
logistic
population
Gompertz
census
goodness of fit
Potential Scenario
691
views
63
downloads
0
comments
2013-Fathalla_Rihan-Delay Differential Equations in Biosciences - Parameter estimation and sensitivity analysis
This is a review article to show that delay differential models have a richer mathematical framework (compared with models without memory or after-effects) and a better consistency with biological phenomena such dynamical diseases and cell growth...
epidemiology
sensitivity
Immunology
physiology
RK-methods
time-lags
Article or Presentation
144
views
61
downloads
0
comments
SIMIODE Spring 2024 Webinars - WikiModel
WikiModel is cloud-based application and requires no installation and is run via a web-browser to facilitate rapid implementation. Equations are typed in as they appear in a textbook. ODEs are automatically integrated via Runge-Kutta methods.
modeling
Software
tool
application
WikiModel
modeling cycle
Modeling Scenario
212
views
307
downloads
0
comments
6-026-IsleRoyaleModeling-ModelingScenario
The primary aim of this project is to draw a connection between differential equations and vector calculus, using population ecology modeling as a vehicle.
ecology
optimization
predator-prey
population
vector calculus
Lagrange multipliers
least squares
Islel Royale
Technique Narrative
374
views
120
downloads
0
comments
2-005-LinearizeItAll-TechniqueNarrative
Linear approximations are often used to simplify nonlinear ordinary differential equations (ODEs) for ease in analysis. The resulting linear approximation produces an ODE where closed form solutions may be obtained.
computation
error
Torricelli's Law
data fitting
linear approximation
Modeling Scenario
261
views
316
downloads
0
comments
1-165-FlushToilet-ModelingScenario
This activity analyzes the spread of a technological innovation using the Bass Model from Economics. The equation is a first-order, two-parameter separable equation and the solution has a characteristic S-shaped curve or sigmoid curve.
julia
Diffusion
innovation
rate of innovation
Bass model
Solver
Potential Scenario
97
views
44
downloads
0
comments
1987-Claude-Marmasse-Studies on differential equations of enzyme kinetics-Biomolecular scheme
The integral curve is compared with the solutions given by the two classical approximations to the problem: it is shown that the steady-state approximation is to be preferred to the rapid equilibrium theory as a general method.
steady-state model
isoclines
enzyme kinetics
Technique Narrative
352
views
146
downloads
0
comments
2-001-NumericalMethodsComparisons-TechniqueNarrative
This material teaches the basics of numerical methods for first order differential equations by following graphical and numerical approaches. We discuss the order of accuracy of the methods and compare their CPU times.
Euler's method
improved Euler's method
RK3 methods
RK4 methods
order of accuracy
absolute error
CPU time
Potential Scenario
333
views
48
downloads
0
comments
2018-Hu-Huang-Dynamic Regulation Responding to an External Stimulus
This study examines the dynamic regulation process responding to an external stimulus. This study introduces the driven damped oscillator model which has an additional parameter to identify different patterns of the steady state.
dynamical systems
regulation
steady state
sales model
external stimulus
Potential Scenario
348
views
68
downloads
0
comments
2017-Varanis-Mereles-Mathematical Model of a Vehicle Crash A Case Study
The model proposed in this paper allows one to obtain the parameters of the system, and then compare them with the ones obtained experimentally to test the suitability of the model with the vehicle crash.
case study
Runge-Kutta
spring mass damper
vehicle crash
Potential Scenario
141
views
40
downloads
0
comments
2015-Sivakumar-EtAl-Approximate Analytical Expression of Concentrations in a Kinetic Model for Biogas Generation from Banana Waste
The initial value problem in a kinetic model for biogas generation from banana waste is discussed. The model involves the system of non-linear differential equations which has variety of non-linear rate function.
chemical kinetics
Michaelis-Menten kinetics
anaerobic digestion
acidogenic steps
banana
methanogenic steps
wastes
Modeling Scenario
321
views
220
downloads
0
comments
1-102C-CancerGrowth-ModelingScenario
This module guides students in the use of differential equation models to predict cancer growth and study treatment outcomes. Several classical models for cancer growth are presented including exponential, power law, Bertalanffy, logistic, and...
optimization
cancer
logistic
exponential
prediction
tumor
growth
data fitting
power law
Bertanffy
Gompertz
Modeling Scenario
196
views
84
downloads
0
comments
3-085-SimplePendulum-ModelingScenario
Thestudent is asked to derive and solve a differential equation that gives the position (angle
Newton's Second Law of Motion
pendulum
kinetic energy
potential energy
Conservation of Energyt
initial conditions
small angle approximation
Taylor polynomial
percent error
Modeling Scenario
184
views
221
downloads
0
comments
6-029-TumorGrowth-ModelingScenario
This modeling scenario guides a student familiar with single ordinary differential equation (ODE) models towards the development of a more complex system of two ODEs for describing the evolution of tumor growth over time.
Pop_Growth Pilot
logistic
comparment
tumor
synthetic data
sum of squares error
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