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Article or Presentation
506
views
100
downloads
0
comments
2007-John_Jungck-Ten_Equations_that_Changed_Biology-Mathematics_in_Problem-Solving_Biology_Curricula The author
These equations were selected upon the basis of wide-spread recognition of the value of the models.
biology
equations
ten equations
Potential Scenario
148
views
81
downloads
0
comments
2015-The European Bioinformatics Institute-BioModels Database
BioModels Database is a repository of computational models of biological processes. Models described from literature are manually curated and enriched with cross-references.
computational biology
BioModels Database
bio database
life science experiments
Potential Scenario
173
views
44
downloads
0
comments
2017-Helen-Byrne-Further Mathematics Biology
These studies will be in the context of ecological, biological and biochemical applications.
epidemics
chemotaxis
enzyme-substrate
ion channels
nerve pulses
gene proagation
tumour
Free Online Textbook
148
views
51
downloads
0
comments
2012-Brian_Ingalls-Mathematical_Modelling_in_Systems_Biology
This text provides an introduction to dynamic mathematical modeling of cellular processes. The emphasis is on using computational tools to investigate models of cellular phenomena.
biology
gene regulatory networks
Models
metabolic networks
signal transduction pathways
electrophysiology
Potential Scenario
161
views
72
downloads
0
comments
2017-Guy-Bart_Stan-Modelling in Biology
This is a very rich set of notes, rich in examples and ideas for modeling. In almost all cases after a model is introduced in real context there is attention to stability analysis.
spring mass
bifurcation
mass action
limit cycles
Free Online Textbook
464
views
95
downloads
0
comments
2012-Brian_Ingalls-Mathematical Modelling in Systems Biology An Introduction
This is a comprehensive text with much biology background to motivate the mathematical modeling, exercises and answers, and many rich examples.
spatial
sensitivity analysis
gene regulatory networks
stochastic
bifurcation
metabolic networks
electrophysiology
transduction
rate laws
biochemical reactions
Free Online Textbook
164
views
81
downloads
0
comments
2014-Jeffrey_Chasnov-Lecture_Notes_on_Introduction_to_Differential_Equations
The differential equations text is 128 pages and develops and motivates the theory of the material nicely, with links to YouTube lectures to assist.
differential equations
biology
textbook
General Resource
200
views
46
downloads
0
comments
2003-Knorrenschild-Gross-Text Books on Mathematical Modeling in Biology
Text Books on Mathematical Modeling in Biology Compiled from the Internet by Michael Knorrenschild,
biology
Mathematical Biology
textbook
text
Free Online Textbook
210
views
83
downloads
0
comments
2018-Eduardo-Sontag-Lecture_Notes_on_Mathematical_Systems_Biology
I am often asked if it is OK to use these notes in courses at other universities. The answer is “of course!” though I strongly suggest that a link to my website be provided, so that students can always access the current version.
biology
textbook
systems
dyanmical system
Modeling Scenario
310
views
137
downloads
0
comments
1-104-InfectionRisk-ModelingScenario
This project is designed to examine differences between the exponential and logistic growth models in biology and how to apply these models in solving epidemic questions.
infection
logistic
exponential
covid
carrying capacity
Potential Scenario
279
views
98
downloads
0
comments
2006-Wilensky-Reisman-Thinking Like a Wolf a Sheep or a Firefly
We describe a computation-based approach that enables students to investigate the connections between different biological levels using agent-based, embodied modeling tools.
simulation
NetLogo
predator-prey
agent-based
wolf
fox
Potential Scenario
178
views
75
downloads
0
comments
2007-I-Liang_Chern-Mathematical Modeling and Differential Equations
In this course, I will mainly focus on, but not limited to, two important classes of mathematical models by ordinary differential equations: • population dynamics in biology • dynamics in classical mechanics.
population dynamics
ecology
dynamics
classical mechanics
chemical reaction
Potential Scenario
135
views
42
downloads
0
comments
1998-K_H_Louie_Clark-P_C_D_Newton-Analysis of differential equation models in biology-clover meristem populations
A simple differential equation model (dynamical system) for clover, based on meristem numbers, is outlined and analysed mathematically.
sensitivity analysis
stability analysis
steady states
growing points
buds
meristems
Modeling Scenario
298
views
270
downloads
0
comments
1-098-NeuronDetection-ModelingScenario
Students study a linear, first order, one-dimensional ordinary differential equation (ODE) and learn how it can help understand basics of neural dynamics. The modeling framework is known in mathematical neuroscience as ``integrate-and-fire''...
biology
neuroscience
neuron physiology
voltage
integrate and fire
threfhols
coincidence detection
RC circuit
Article or Presentation
167
views
86
downloads
0
comments
2015-European_Bioinformatics_Institute-Bio-Models-Database
Bio Models Database is a repository of computational models of biological processes. Models described from literature are manually curated and enriched with cross-references. All models are provided in the Public Domain.
biology
database
bioinformatics
Models
computational models
Potential Scenario
294
views
47
downloads
0
comments
2018-Robert_Phair-Differential_equation_methods_for_simulation_of_GFP_kinetics_in_non–steady_state_experiments
Here, we derive new tracer kinetic analytical methods for non–steady state biological systems by constructing mechanistic nonlinear differential equation models of the underlying cell biological processes.
protein quality control
kinetics
Cells
steady state
chemical kinetics
fluouresence
photoactivation
inytracellular
Article or Presentation
128
views
33
downloads
0
comments
2002-Patrick_Nelson-Alan_Perelson-Mathematical_analysis_of_delay_differential _equation_models_of_HIV-1_infection
Models of HIV-1 infection that include intracellular delays are more accurate representations of the biology and change the estimated values of kinetic parameters when compared to models without delays.
delay
HIV-1
T cells
combination antiviral therapy
Potential Scenario
178
views
52
downloads
0
comments
1997-Bonnie_Shulman-Using Original Sources to Teach the Logistic Equation
This Module uses original data, diagrams, and texts from three original sources to develop the logistic model of growth in natural systems with limited resources.
logistic
original source
Potential Scenario
123
views
70
downloads
0
comments
2019-Fred_Brauer-The_Final_Size_of_a_Serious_Epidemic
In an epidemic of a serious disease, there is likely to be behavioral response that decreases the epidemic size considerably.
epidemic
final size
behavioral response
SIER model
relations
Potential Scenario
177
views
61
downloads
0
comments
2011-Nancy_Rodrıguez-Applied Partial Differential Equations in Crime Modeling and Biological Aggregation
In the first part we study a fully-parabolic system of PDEs for residential burglary ‘hotspots’ (spatio-temporal areas of high density of crime). In this work we are concerned with the existence and uniqueness of solutions of this model. In
biology
Diffusion
Keller-Segel model
chemotaxis
crime
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