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    Potential Scenario
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    2015-The European Bioinformatics Institute-BioModels Database
    BioModels Database is a repository of computational models of biological processes. Models described from literature are manually curated and enriched with cross-references.
    computational biologyBioModels Databasebio databaselife science experiments
    Free Online Textbook
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    2009-Eriksson- Estep-Hansho-Johnson-Computational Differential Equations
    Differential Equations and Advanced Computational Differential Equations, presents a unified approach to computational mathematical modeling using differential equations based on a principle of a fusion of mathematics and computation.
    Galerkin
    Article or Presentation
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    86

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    2015-European_Bioinformatics_Institute-Bio-Models-Database
    Bio Models Database is a repository of computational models of biological processes. Models described from literature are manually curated and enriched with cross-references. All models are provided in the Public Domain.
    biologydatabasebioinformaticsModelscomputational models
    Potential Scenario
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    2016-Bonin-EtAl-Mathematical modeling based on ordinary differential equations-vaccinology
    We developed a model of the immune response to vaccination against the yellow fever. Our simulations have shown consistent results when compared with experimental data available in the literature.
    Immunologyimmune systemAntigenvaccinologyyellow fever
    Free Online Textbook
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    2012-Brian_Ingalls-Mathematical_Modelling_in_Systems_Biology
    This text provides an introduction to dynamic mathematical modeling of cellular processes. The emphasis is on using computational tools to investigate models of cellular phenomena.
    biologygene regulatory networksModelsmetabolic networkssignal transduction pathwayselectrophysiology
    Free Online Textbook
    142

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    66

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    2015-H_Sayama-Intro to Modeling and Analysis of Complex Systems
    Introduces students to mathematical/computational modeling and analysis developed in the emerging interdisciplinary field of Complex Systems Science.
    textbooktext
    Free Online Textbook
    464

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    2012-Brian_Ingalls-Mathematical Modelling in Systems Biology An Introduction
    This is a comprehensive text with much biology background to motivate the mathematical modeling, exercises and answers, and many rich examples.
    spatialsensitivity analysisgene regulatory networksstochasticbifurcationmetabolic networkselectrophysiologytransductionrate lawsbiochemical reactions
    Modeling Scenario
    314

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    301

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    6-002-EulerCromerPendulum-ModelingScenario
    This activity introduces students to the concept of numerical stability. While modeling a simple pendulum, students compare performance of the semi-implicit Euler-Cromer method with Euler's method and the higher-order Improved Euleror algorithm.
    pendulumsemi-implicit methodsEuler-Cromernumerical solvers
    General Resource
    200

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    46

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    2003-Knorrenschild-Gross-Text Books on Mathematical Modeling in Biology
    Text Books on Mathematical Modeling in Biology Compiled from the Internet by Michael Knorrenschild,
    biologyMathematical Biologytextbooktext
    Technique Narrative
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    2-005-LinearizeItAll-TechniqueNarrative
    Linear approximations are often used to simplify nonlinear ordinary differential equations (ODEs) for ease in analysis. The resulting linear approximation produces an ODE where closed form solutions may be obtained.
    computationerrorTorricelli's Lawdata fittinglinear approximation
    Free Online Textbook
    156

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    60

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    2016-Langtangen-Pedersen - Scaling of Differential Equations
    Nowadays, the greatest practical benefit of scaling is related to running numerical simulations, since scaling greatly simplifies the choice of values for the input data and makes the simulations results more widely applicable.
    scalingdimensionlesscontinuum mechanics
    Technique Narrative
    373

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    197

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    1-030-RandomPerturbation-TechniqueNarrative
    After a brief historical view of this problem, we will demonstrate the derivation of first order linear differential equations with random perturbations.
    random perturbationBrownian motionLangevin equationRiemann-Steiltjes integralWiener processIto's calculus
    Potential Scenario
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    2006-Wilensky-Reisman-Thinking Like a Wolf a Sheep or a Firefly
    We describe a computation-based approach that enables students to investigate the connections between different biological levels using agent-based, embodied modeling tools.
    simulationNetLogopredator-preyagent-basedwolffox
    Potential Scenario
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    51

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    2007-Zenker-Rubin-Clermont-From inverse problems in mathematical physiology to quantitative differential diagnoses
    The improved capacity to acquire quantitative data in a clinical setting has generally failed to improve outcomes in acutely ill patients, suggesting a need for advances in computer-supported data interpretation and decision making.
    physiologyinverse problem
    Potential Scenario
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    2020-Stepien_Kostelich_Kuang-Mathematics Cancer An Undergraduate Bridge Course in Applied Mathematics
    Most undergraduates have limited experience with mathematical modeling. This paper describes a course on the mathematical models of cancer growth and treatment.
    differential equationsmodelingundergraduate educationcancertumor
    Potential Scenario
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    1999-Peter_Deuflhard-Differential Equations in Technology and Medicine
    It deals with a variety of challenging real life problems selected from clinical cancer therapy, communication technology, polymer production, and pharmaceutical drug design.
    cancerdesigntumordrugpolymertherapy
    Potential Scenario
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    2011-Mandal-EtAl-Mathematical models of malaria
    The first aim of this article is to develop, starting from the basic models, a hierarchical structure of a range of deterministic models of different levels of complexity. The second is to elaborate, using some of the representative mathematical...
    epidemiologytransmissionhost-parasitemalariaRoss model
    Potential Scenario
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    2014-Blomhøj-EtAl-Compartment models
    An overview of compartment models with many rich illustrations and much attention to various numerical methods in solutions of the resulting differential equations using Matlab. Also included is a section on the limitations of compartment models.
    concentrationkineticsphysiologycompartmentsalttankbalancereactionsminkbathtub
    Potential Scenario
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    2017-Jean-Roux-Mathematical Models in Air Quality Problems
    Presents many models with analysis in air quality control. Starts with chemical kinetics models and builds complexity to PDE models.
    air pollution effects on forest ecosystemsfinite volume methodboundary layerchemical kineticsfinite differenceemissionsdepositionsadvection
    Potential Scenario
    160

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    67

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    2014-Patel-Schlijper-Models of Consumer Behavior
    The problem posed to the Study Group was to construct models for consumer behaviour that might be useful in tools for brand management in markets for fast-moving consumer goods.
    consumer behaviormarket share