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Downloads
Views
Date
Relevance
Modeling Scenario
307
views
469
downloads
0
comments
6-070-BeerBubbles-ModelingScenario
The goal of this project is to set up and numerically solve a first-order nonlinear ordinary differential equation (ODE) system of three equations in three unknowns that models beer bubbles that form at the bottom of a glass and rise to the top.
molecular forensics
BEER
sphere
bubble
Newton' Second Law
Ideal Gas Law
drag force
Hadamard
Stokes
mole
Free Online Textbook
464
views
95
downloads
0
comments
2012-Brian_Ingalls-Mathematical Modelling in Systems Biology An Introduction
This is a comprehensive text with much biology background to motivate the mathematical modeling, exercises and answers, and many rich examples.
spatial
sensitivity analysis
gene regulatory networks
stochastic
bifurcation
metabolic networks
electrophysiology
transduction
rate laws
biochemical reactions
Potential Scenario
148
views
81
downloads
0
comments
2015-The European Bioinformatics Institute-BioModels Database
BioModels Database is a repository of computational models of biological processes. Models described from literature are manually curated and enriched with cross-references.
computational biology
BioModels Database
bio database
life science experiments
Potential Scenario
294
views
47
downloads
0
comments
2018-Robert_Phair-Differential_equation_methods_for_simulation_of_GFP_kinetics_in_non–steady_state_experiments
Here, we derive new tracer kinetic analytical methods for non–steady state biological systems by constructing mechanistic nonlinear differential equation models of the underlying cell biological processes.
protein quality control
kinetics
Cells
steady state
chemical kinetics
fluouresence
photoactivation
inytracellular
Potential Scenario
211
views
26
downloads
0
comments
2014-John_Cain-Chemical Reaction Kinetics Mathematical Underpinnings
The usual way of deriving kinetic equations involves application of the principle of conservation of mass in conjunction with the law of mass action. Here, examples of kinetic models for several basic processes are discussed.
kinetics
biochemical reaction
reactants
products
Free Online Textbook
148
views
51
downloads
0
comments
2012-Brian_Ingalls-Mathematical_Modelling_in_Systems_Biology
This text provides an introduction to dynamic mathematical modeling of cellular processes. The emphasis is on using computational tools to investigate models of cellular phenomena.
biology
gene regulatory networks
Models
metabolic networks
signal transduction pathways
electrophysiology
Potential Scenario
144
views
85
downloads
0
comments
2014-Wrona-EtAl-Two-compartment model as a teaching tool for cholesterol homeostasis
To investigate cholesterol transport in the circulatory system, we have previously developed a two-compartment mathematical model. Here, we show how this model can be used as a teaching tool for cholesterol homeostasis.
metabolic syndrome
compartment model
cholesterol
high blood cholesterol
Potential Scenario
279
views
98
downloads
0
comments
2006-Wilensky-Reisman-Thinking Like a Wolf a Sheep or a Firefly
We describe a computation-based approach that enables students to investigate the connections between different biological levels using agent-based, embodied modeling tools.
simulation
NetLogo
predator-prey
agent-based
wolf
fox
Potential Scenario
134
views
52
downloads
0
comments
2019-Radulescu-Lundgren-A_pharmacokinetic_model_of_lead_absorption_and_calcium_competitive_dynamics
We build and analyze a compartmental model of lead pharmacokinetics, focused specifically on addressing neurotoxicity.
QUBES Leadership Team
parameters
absorption
bifurcation
pharmacokinetics
calcium
cognitive decline
Technique Narrative
377
views
208
downloads
0
comments
1-009-Bifurcation-TechniqueNarrative
We lead students to investigate first-order differential equations that contain unknown parameters. Students discover what happens to the qualitative behavior of solutions to these equations as these parameters vary.
bifurcation
qualitative behavior
bifurcation diagram
Article or Presentation
168
views
86
downloads
0
comments
2015-European_Bioinformatics_Institute-Bio-Models-Database
Bio Models Database is a repository of computational models of biological processes. Models described from literature are manually curated and enriched with cross-references. All models are provided in the Public Domain.
biology
database
bioinformatics
Models
computational models
Free Online Textbook
211
views
83
downloads
0
comments
2018-Eduardo-Sontag-Lecture_Notes_on_Mathematical_Systems_Biology
I am often asked if it is OK to use these notes in courses at other universities. The answer is “of course!” though I strongly suggest that a link to my website be provided, so that students can always access the current version.
biology
textbook
systems
dyanmical system
General Resource
200
views
46
downloads
0
comments
2003-Knorrenschild-Gross-Text Books on Mathematical Modeling in Biology
Text Books on Mathematical Modeling in Biology Compiled from the Internet by Michael Knorrenschild,
biology
Mathematical Biology
textbook
text
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