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    2010-Kar-Chakraborty-Bioeconomic_modelling_of_a_prey_predator_system_using_differential_algebraic_equations
    We propose a biological economic model based on prey-predator dynamics where the prey species are continuously harvested and predation is considered with type II functional response.
    economicsbifurcationharvestfisheryequilibriumdifferential algebraic equation
    Modeling Scenario
    258

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    114

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    1-143-PopulationModelVariationsMATLAB-ModelingScenario
    Students will walk through a detailed derivation and review of basic population models (exponential and logistic) to create and understand variations of those models.
    population dynamicsecologylogistic growthbifurcation theoryslope fieldsextinctionharvestingqualitative analysisstocking
    Potential Scenario
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    51

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    2019-Radulescu-Lundgren-A_pharmacokinetic_model_of_lead_absorption_and_calcium_competitive_dynamics
    We build and analyze a compartmental model of lead pharmacokinetics, focused specifically on addressing neurotoxicity.
    QUBES Leadership Teamparametersabsorptionbifurcationpharmacokineticscalciumcognitive decline
    Free Online Textbook
    139

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    2014-Andre_De Ross-Modeling Population Dynamics
    This course is intended as an introduction to the formulation, analysis and application of mathematical models that describe the dynamics of biological populations.
    predator-preycompetitionpopulationgrowthbifrucationtext
    Technique Narrative
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    1-010-AtmosphericCO2Bifurcation-TechniqueNarrative
    Students are introduced to the concept of a bifurcation in a first-order ordinary differential equation (ODE) through a modeling scenario involving atmospheric carbon dioxide whish is taken as a parameter and temperature is a function of time.
    carbon dioxideSurface Atmosphere Exchangebifurcationfold bifurcationsaddle node
    Potential Scenario
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    2018-Banerjee-EtAl-Prey-Predator Model with a Nonlocal Bistable Dynamics of Prey
    The primary goal of our present work is to consider nonlocal consumption of resources in a spatiotemporal prey-predator model with bistable reaction kinetics for prey growth in the absence of predators.
    predator-preynonlocal consumptionTuring bifurcationspatial Hopf bifurcationspatio-temporal patternprey growth
    Potential Scenario
    274

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    64

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    2017-Suebcharoen-Analysis of a Predator-Prey Model with Switching and Stage-Structure for Predator
    This paper studies the behavior of a predator-prey model with switching and stage-structure for predator.
    stage structurepredatorpreybifurcationswitching
    Potential Scenario
    122

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    2012-Yuan_Yuan-A coupled plankton system with instantaneous and delayed predation
    We present two simple plankton population models: one has instantaneous predation, another has delayed predation.
    phytoplanktonbifurcationorbitsherbivorous zooplanktoneffect of fishmaturation time delay
    Modeling Scenario
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    1-135-FishHarvesting-ModelingScenario
    This short activity will walk students through a guided list of questions to help them to understand how the stability of equilibrium changes with changes in a model parameter, in this case the rate of harvesting fish.
    population dynamicsfishstabilitybifurcationharvest
    Technique Narrative
    326

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    1-009-Bifurcation-TechniqueNarrative
    We lead students to investigate first-order differential equations that contain unknown parameters. Students discover what happens to the qualitative behavior of solutions to these equations as these parameters vary.
    bifurcationqualitative behaviorbifurcation diagram
    Potential Scenario
    142

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    2017-Guy-Bart_Stan-Modelling in Biology
    This is a very rich set of notes, rich in examples and ideas for modeling. In almost all cases after a model is introduced in real context there is attention to stability analysis.
    spring massbifurcationmass actionlimit cycles
    Modeling Scenario
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    6-075-LorenzSystemSimulation-ModelingScenario
    The Lorenz system is examined by students as a simple model of chaotic behavior or strange attractor. MATLAB code is created to find the numerical solutions of the Lorenz’ system of nonlinear ordinary differential equations using various parameters.
    chaososcillatorLorenzwaterwheelstrange attractorbifurcation effect
    Potential Scenario
    130

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    2006-Cooke-Elderkin-Huang-Predator-Prey interactions with delays due to juvenile maturation
    This paper focuses on predator-prey models with juvenile/mature class structure for each of the predator and prey populations in turn, further classified by whether juvenile or mature individuals are active with respect to the predation process.
    predator-preyhost-parasitebifurcationage structrematuration delay
    Potential Scenario
    215

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    2005-Albert_Tarantola-Inverse Problem Theory and Methods for Model Parameter Estimation
    This is a bible of approaches to support parameter estimation approaches in inverse problems. Theory and algorithms are offers with examples.
    Algorithminverse probleminverse
    Potential Scenario
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    39

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    2014-Brun-EtAl-An introduction to the mechanics of the lasso
    Here, we study the mechanics of the simplest rope trick, the Flat Loop, in which the rope is driven by the steady circular motion of the roper’s hand in a horizontal plane.
    bifurcationmotionlassorod modelrodeo
    Potential Scenario
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    2011-Radouane_Yafia-A Study of Differential Equations Modeling Malignant Tumor Cells in Competition with Immune System
    In this paper, we present a competition model of malignant tumor growth that includes the immune system response. The model considers two populations: immune system (effector cells) and population of tumor (tumor cells).
    Immunologytumorhopf bifrucation
    Free Online Textbook
    427

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    2012-Brian_Ingalls-Mathematical Modelling in Systems Biology An Introduction
    This is a comprehensive text with much biology background to motivate the mathematical modeling, exercises and answers, and many rich examples.
    spatialsensitivity analysisgene regulatory networksstochasticbifurcationmetabolic networkselectrophysiologytransductionrate lawsbiochemical reactions
    Potential Scenario
    129

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    2008-William_Revelle-Cues Tendencies and Actions-The Dynamics of Action Revisited
    This article describes a reparameterization of the original theory of dynamics of action and applies the power of simple modeling to the study of action, emotions, and social behavior.
    psychologytask referenceachievement motivationdynamics of action
    Potential Scenario
    123

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    2016-Barbarossa-Kuttler-Mathematical Modeling of Bacteria Communication in Continuous Cultures
    This paper presents a simple system of delay differential equations (DDEs) for quorum sensing of Pseudomonas putida with one positive feedback plus one (delayed) negative feedback mechanism.
    gene regulatory networkschemostatbifurcationNumerical Simulationquorum sensing
    Potential Scenario
    164

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    64

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    2014-Allen-EtAl-Perturbations in Epidemiological Models -When zombies attack we can survive
    In this paper, we investigate the existence of stability-changing bifurcations in epidemiological models used to study the spread of zombiism through a human population.
    epidemiologydynamical systemszombiesbifurcationperturbation