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Downloads
Views
Date
Relevance
Article or Presentation
473
views
87
downloads
0
comments
2007-John_Jungck-Ten_Equations_that_Changed_Biology-Mathematics_in_Problem-Solving_Biology_Curricula The author
These equations were selected upon the basis of wide-spread recognition of the value of the models.
biology
equations
ten equations
Potential Scenario
128
views
74
downloads
0
comments
2015-The European Bioinformatics Institute-BioModels Database
BioModels Database is a repository of computational models of biological processes. Models described from literature are manually curated and enriched with cross-references.
computational biology
BioModels Database
bio database
life science experiments
Potential Scenario
178
views
40
downloads
0
comments
2012-Greer-Palin-Students in Differential Equations and Epidemiology Model a Campus Outbreak of pH1N1
We describe a semester-long collaboration between a mathematics class and a biology class. Students worked together to understand and model the trajectory of the pandemic H1N1, pH1N1, outbreak across campus in fall 2009.
H1N1
pandemic
spread
outbreak
pH1N1
Potential Scenario
156
views
37
downloads
0
comments
2017-Helen-Byrne-Further Mathematics Biology
These studies will be in the context of ecological, biological and biochemical applications.
epidemics
chemotaxis
enzyme-substrate
ion channels
nerve pulses
gene proagation
tumour
Free Online Textbook
127
views
46
downloads
0
comments
2012-Brian_Ingalls-Mathematical_Modelling_in_Systems_Biology
This text provides an introduction to dynamic mathematical modeling of cellular processes. The emphasis is on using computational tools to investigate models of cellular phenomena.
biology
gene regulatory networks
Models
metabolic networks
signal transduction pathways
electrophysiology
Modeling Scenario
511
views
231
downloads
0
comments
1-104A-T-InfectionRisk-ModelingScenario
This project is designed to examine differences between the exponential and logistic growth models in biology and how to apply these models in solving epidemic questions and comparing to actual disease data sets.
regression
infection
COVID19
carrying capacity
logistic equation
exponential model
Potential Scenario
136
views
69
downloads
0
comments
2017-Guy-Bart_Stan-Modelling in Biology
This is a very rich set of notes, rich in examples and ideas for modeling. In almost all cases after a model is introduced in real context there is attention to stability analysis.
spring mass
bifurcation
mass action
limit cycles
Free Online Textbook
408
views
85
downloads
0
comments
2012-Brian_Ingalls-Mathematical Modelling in Systems Biology An Introduction
This is a comprehensive text with much biology background to motivate the mathematical modeling, exercises and answers, and many rich examples.
spatial
sensitivity analysis
gene regulatory networks
stochastic
bifurcation
metabolic networks
electrophysiology
transduction
rate laws
biochemical reactions
Free Online Textbook
137
views
68
downloads
0
comments
2014-Jeffrey_Chasnov-Lecture_Notes_on_Introduction_to_Differential_Equations
The differential equations text is 128 pages and develops and motivates the theory of the material nicely, with links to YouTube lectures to assist.
differential equations
biology
textbook
General Resource
174
views
42
downloads
0
comments
2003-Knorrenschild-Gross-Text Books on Mathematical Modeling in Biology
Text Books on Mathematical Modeling in Biology Compiled from the Internet by Michael Knorrenschild,
biology
Mathematical Biology
textbook
text
Free Online Textbook
180
views
74
downloads
0
comments
2018-Eduardo-Sontag-Lecture_Notes_on_Mathematical_Systems_Biology
I am often asked if it is OK to use these notes in courses at other universities. The answer is “of course!” though I strongly suggest that a link to my website be provided, so that students can always access the current version.
biology
textbook
systems
dyanmical system
Modeling Scenario
281
views
128
downloads
0
comments
1-104-InfectionRisk-ModelingScenario
This project is designed to examine differences between the exponential and logistic growth models in biology and how to apply these models in solving epidemic questions.
infection
logistic
exponential
covid
carrying capacity
Potential Scenario
101
views
37
downloads
0
comments
2008-Brewer-EtAl-Fitting ordinary differential equations to short time course data
In this paper, we present a survey of existing algorithms and describe the main approaches. We also introduce and evaluate a new efficient technique for estimating ODEs linear in parameters particularly suited to situations where noise levels are...
time series
Evaluation SPLINE
gene
least squares
bifurcation
Potential Scenario
248
views
78
downloads
0
comments
2006-Wilensky-Reisman-Thinking Like a Wolf a Sheep or a Firefly
We describe a computation-based approach that enables students to investigate the connections between different biological levels using agent-based, embodied modeling tools.
simulation
NetLogo
predator-prey
agent-based
wolf
fox
Potential Scenario
241
views
40
downloads
0
comments
2006-Juska-Gedminiene-Ivanec-Growth of Microbial Populations-Mathematical Modeling-Laboratory Exercises-Model-Based Data Analysis
The aim is to teach the students to use a fresh approach to the problems they are familiar with, to come up with an articulate verbal model after a mental effort, to express it in rigorous mathematical terms, to solve (with the aid of computers).
population growth rate
logistic equation
Verhulst equation
generation time
lag time
Potential Scenario
143
views
69
downloads
0
comments
2007-I-Liang_Chern-Mathematical Modeling and Differential Equations
In this course, I will mainly focus on, but not limited to, two important classes of mathematical models by ordinary differential equations: • population dynamics in biology • dynamics in classical mechanics.
population dynamics
ecology
dynamics
classical mechanics
chemical reaction
Potential Scenario
137
views
52
downloads
0
comments
1935 GFGause Article Predator Prey Oscillations
N/A
Lotka-Volterra
predator
paramecium
prey
cycle
oscillate
Potential Scenario
163
views
37
downloads
0
comments
2013-Alicia_Caldwell-Students Rise to the Challenge of Modeling Yeast Growth Despite Sour Hiccups from Imperfect Data
This paper describes a lab in which students in an Applied Mathematics in Biology course observe the growth of Saccharomyces cerevisiae, a yeast strain, in differing sugar concentrations for use in learning modeling.
Saccharomyces cerevisiae
logistic
yeast
death
growth
sugar
alcohol
Potential Scenario
119
views
39
downloads
0
comments
1998-K_H_Louie_Clark-P_C_D_Newton-Analysis of differential equation models in biology-clover meristem populations
A simple differential equation model (dynamical system) for clover, based on meristem numbers, is outlined and analysed mathematically.
sensitivity analysis
stability analysis
steady states
growing points
buds
meristems
Modeling Scenario
262
views
238
downloads
0
comments
1-098-NeuronDetection-ModelingScenario
Students study a linear, first order, one-dimensional ordinary differential equation (ODE) and learn how it can help understand basics of neural dynamics. The modeling framework is known in mathematical neuroscience as ``integrate-and-fire''...
biology
neuroscience
neuron physiology
voltage
integrate and fire
threfhols
coincidence detection
RC circuit
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