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Article or Presentation
205
views
49
downloads
0
comments
2013-Brian_Winkel-Reflecting_On_Walls
We reflect on our passion for teaching mathematics, useful mathematics, by considering our understandings of just what a wall is and what a wall means to us.
mathematics
mathematical model
learning
cell wall
Modeling Scenario
340
views
761
downloads
0
comments
1-047-Condensation-ModelingScenario
We simulate the random motion of 200 particles in a 50 by 50 square in which a particle bounces off the two vertical and top walls and condenses on the bottom wall. Animations are produced and data is offered for modeling with a differential...
simulation
sum of square errors
condensation
best fit
Modeling Scenario
355
views
378
downloads
0
comments
1-047a-CondensationOptimization-ModelingScenario
We seek to optimize a condensation process which is modeled by a simulation using the random motion of 200 particles in a 50 by 50 square in which a particle bounces off the two vertical and top walls and condenses on the bottom wall.
simulation
data
optimization
energy
condensation
best fit
cost
sum of scquare errors
Modeling Scenario
169
views
143
downloads
0
comments
3-150-ItsABlastFurnace-ModelingScenario
This project uses the steady-state heat equation to model the temperature distribution in an industrial furnace used for metal production, for example, a blast furnace.
steady state
heat equation
inverse problem
furnace
Potential Scenario
137
views
50
downloads
0
comments
2018-Winkle-Igoshin-Bennett-Josic-Ott-Modeling_Mechanical_Interactions_in_Growing_Populations_of_Rod-Shaped_Bacteria
Here, we present an agent-based model that allows growing cells to detect and respond to mechanical interactions.
bacteria
agent-based
populationb
rod-shaped
cellular growth
Potential Scenario
711
views
63
downloads
0
comments
2013-Fathalla_Rihan-Delay Differential Equations in Biosciences - Parameter estimation and sensitivity analysis
This is a review article to show that delay differential models have a richer mathematical framework (compared with models without memory or after-effects) and a better consistency with biological phenomena such dynamical diseases and cell growth...
epidemiology
sensitivity
Immunology
physiology
RK-methods
time-lags
Potential Scenario
265
views
41
downloads
0
comments
2018-Robert_Phair-Differential_equation_methods_for_simulation_of_GFP_kinetics_in_non–steady_state_experiments
Here, we derive new tracer kinetic analytical methods for non–steady state biological systems by constructing mechanistic nonlinear differential equation models of the underlying cell biological processes.
protein quality control
kinetics
Cells
steady state
chemical kinetics
fluouresence
photoactivation
inytracellular
Potential Scenario
128
views
83
downloads
0
comments
2015-Heiko_Enderling-Integrating experimental data to calibrate quantitative cancer models
For quantitative cancer models to be meaningful and interpretable the number of unknown parameters must be kept minimal. We focus on a tumor hierarchy of cancer stem and progenitor non-stem cancer cells.
cancer
tumor
fitting
agent-based
Potential Scenario
118
views
56
downloads
0
comments
2016-Barbarossa-Kuttler-Mathematical Modeling of Bacteria Communication in Continuous Cultures
This paper presents a simple system of delay differential equations (DDEs) for quorum sensing of Pseudomonas putida with one positive feedback plus one (delayed) negative feedback mechanism.
gene regulatory networks
chemostat
bifurcation
Numerical Simulation
quorum sensing
Potential Scenario
119
views
66
downloads
0
comments
2015-Khan-EtAl-How differential equations influence the tumor growth via mathematical models
This work demonstrates the importance of differential equations to develop mathematical model of tumor growth.
tumor
cancder
cancerous cells
immunotherapy
malignant
Free Online Textbook
396
views
85
downloads
0
comments
2012-Brian_Ingalls-Mathematical Modelling in Systems Biology An Introduction
This is a comprehensive text with much biology background to motivate the mathematical modeling, exercises and answers, and many rich examples.
spatial
sensitivity analysis
gene regulatory networks
stochastic
bifurcation
metabolic networks
electrophysiology
transduction
rate laws
biochemical reactions
Potential Scenario
131
views
49
downloads
0
comments
2018-Dyjuan_Tatro-The_Mathematics_of_Cancer-Fitting_Gompertz_Equation_to_Tumor_Growth
Fitting the Gompertz Model to long term breast cancer study data, this project ascertains gompertzian parameters that can be used to predicts tumor growth as a function of time.
tumor
growth
Gompertz
fitting
parameter
Potential Scenario
155
views
54
downloads
0
comments
2002-Nelson-Perelson-Mathematical analysis of delay differential equations models of HIV-1 infection
We develop and analyze a set of models that include intracellular delays, combination antiretroviral therapy, and the dynamics of both infected and uninfected T cells.
infection
HIV
T cells
Potential Scenario
118
views
41
downloads
0
comments
1989-EY_Rodin-S_Jaques-Countercurrent Oxygen Exchange in the Swim Bladders of Deep-Sea Fish
Oxygen diffuses from lungs into blood, nutrients diffuse from intestinal tracts into blood and from blood into various cells, and waste products diffuse from cells back into blood.
fish
Cell Membrane
flow
blood
bladder
countercurrent
Modeling Scenario
294
views
159
downloads
0
comments
1-005B-ChemDataCollection-ModelingScenario
A chemistry graduate student is collecting data on a chemical reaction and does a poor job of collecting the data. Indeed, he only collects the data at the start and end of a number of three minute intervals and does not note the times.
kinetics
laboratory
order of reaction
chemical reaction
chemical data
infusion
Potential Scenario
125
views
44
downloads
0
comments
2017-Bonin-EtAl-Mathematical modeling based on ordinary differential equations - promising approach to vaccinology
As a proof of concept, we developed a model of the immune response to vaccination against the yellow fever. Our simulations have shown consistent results when compared with experimental data available in the literature.
immune system
yellow fever
computational immunology
computational vaccinology
Potential Scenario
135
views
69
downloads
0
comments
2016-Bonin-EtAl-Mathematical modeling based on ordinary differential equations-vaccinology
We developed a model of the immune response to vaccination against the yellow fever. Our simulations have shown consistent results when compared with experimental data available in the literature.
Immunology
immune system
Antigen
vaccinology
yellow fever
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