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Downloads
Views
Date
Relevance
Potential Scenario
148
views
81
downloads
0
comments
2015-The European Bioinformatics Institute-BioModels Database
BioModels Database is a repository of computational models of biological processes. Models described from literature are manually curated and enriched with cross-references.
computational biology
BioModels Database
bio database
life science experiments
Free Online Textbook
148
views
51
downloads
0
comments
2012-Brian_Ingalls-Mathematical_Modelling_in_Systems_Biology
This text provides an introduction to dynamic mathematical modeling of cellular processes. The emphasis is on using computational tools to investigate models of cellular phenomena.
biology
gene regulatory networks
Models
metabolic networks
signal transduction pathways
electrophysiology
Article or Presentation
168
views
86
downloads
0
comments
2015-European_Bioinformatics_Institute-Bio-Models-Database
Bio Models Database is a repository of computational models of biological processes. Models described from literature are manually curated and enriched with cross-references. All models are provided in the Public Domain.
biology
database
bioinformatics
Models
computational models
Free Online Textbook
464
views
95
downloads
0
comments
2012-Brian_Ingalls-Mathematical Modelling in Systems Biology An Introduction
This is a comprehensive text with much biology background to motivate the mathematical modeling, exercises and answers, and many rich examples.
spatial
sensitivity analysis
gene regulatory networks
stochastic
bifurcation
metabolic networks
electrophysiology
transduction
rate laws
biochemical reactions
Potential Scenario
279
views
98
downloads
0
comments
2006-Wilensky-Reisman-Thinking Like a Wolf a Sheep or a Firefly
We describe a computation-based approach that enables students to investigate the connections between different biological levels using agent-based, embodied modeling tools.
simulation
NetLogo
predator-prey
agent-based
wolf
fox
Free Online Textbook
143
views
70
downloads
0
comments
2009-Eriksson- Estep-Hansho-Johnson-Computational Differential Equations
Differential Equations and Advanced Computational Differential Equations, presents a unified approach to computational mathematical modeling using differential equations based on a principle of a fusion of mathematics and computation.
Galerkin
Potential Scenario
200
views
73
downloads
0
comments
2017-D_Goulet-Modeling, Simulating, and Parameter Fitting of Biochemical Kinetic Experiments
In many chemical and biological applications, systems of differential equations containing unknown parameters are used to explain empirical observations and experimental data. The differential equations are typically nonlinear.
optimization
Biochemistry
sensitivity analysis
chromatography
mass action
cluster analysis
conservation laws
dimerization
estrogen receptor protein
Potential Scenario
158
views
51
downloads
0
comments
2018-Winkle-Igoshin-Bennett-Josic-Ott-Modeling_Mechanical_Interactions_in_Growing_Populations_of_Rod-Shaped_Bacteria
Here, we present an agent-based model that allows growing cells to detect and respond to mechanical interactions.
bacteria
agent-based
populationb
rod-shaped
cellular growth
Potential Scenario
147
views
57
downloads
0
comments
2017-Bonin-EtAl-Mathematical modeling based on ordinary differential equations - promising approach to vaccinology
As a proof of concept, we developed a model of the immune response to vaccination against the yellow fever. Our simulations have shown consistent results when compared with experimental data available in the literature.
immune system
yellow fever
computational immunology
computational vaccinology
General Resource
200
views
46
downloads
0
comments
2003-Knorrenschild-Gross-Text Books on Mathematical Modeling in Biology
Text Books on Mathematical Modeling in Biology Compiled from the Internet by Michael Knorrenschild,
biology
Mathematical Biology
textbook
text
Potential Scenario
161
views
82
downloads
0
comments
2016-Bonin-EtAl-Mathematical modeling based on ordinary differential equations-vaccinology
We developed a model of the immune response to vaccination against the yellow fever. Our simulations have shown consistent results when compared with experimental data available in the literature.
Immunology
immune system
Antigen
vaccinology
yellow fever
Potential Scenario
152
views
48
downloads
0
comments
1999-Peter_Deuflhard-Differential Equations in Technology and Medicine
It deals with a variety of challenging real life problems selected from clinical cancer therapy, communication technology, polymer production, and pharmaceutical drug design.
cancer
design
tumor
drug
polymer
therapy
Potential Scenario
128
views
48
downloads
0
comments
2010-Shianga-EtAl-Computational model of the human glucose-insulin regulatory system
A computational model of insulin secretion and glucose metabolism for assisting the diagnosis of diabetes mellitus in clinical research is introduced. The
glucose tolerance test
sum of squared residuals
multiple shooting method
cost function
Potential Scenario
269
views
72
downloads
0
comments
2020-Stepien_Kostelich_Kuang-Mathematics Cancer An Undergraduate Bridge Course in Applied Mathematics
Most undergraduates have limited experience with mathematical modeling. This paper describes a course on the mathematical models of cancer growth and treatment.
differential equations
modeling
undergraduate education
cancer
tumor
Free Online Textbook
142
views
66
downloads
0
comments
2015-H_Sayama-Intro to Modeling and Analysis of Complex Systems
Introduces students to mathematical/computational modeling and analysis developed in the emerging interdisciplinary field of Complex Systems Science.
textbook
text
Potential Scenario
145
views
64
downloads
0
comments
2017-Brandi-Garcia-Motivating engineering students to math classes - Practical experience teaching ODEs
In this paper we propose an approach to teaching-learning process of mathematical concepts to engineering students with a motivational factor: a practical problem to be modeled in which students must apply concepts seen in class, in particular...
computational tools
teaching
engineering students
practical problem
Potential Scenario
146
views
92
downloads
0
comments
2017-Alex_Honchar-Neural Networks For Solving Differential Equations
In this post I want to show how I applied simple feed-forward NNs to different differential equations with increasing complexity: ODEs, second order ODEs, and, finally, PDEs.
neural networks
Cybenko theorem
diffusion equation
fluid dynamics
Potential Scenario
769
views
72
downloads
0
comments
2013-Fathalla_Rihan-Delay Differential Equations in Biosciences - Parameter estimation and sensitivity analysis
This is a review article to show that delay differential models have a richer mathematical framework (compared with models without memory or after-effects) and a better consistency with biological phenomena such dynamical diseases and cell growth...
epidemiology
sensitivity
Immunology
physiology
RK-methods
time-lags
Modeling Scenario
314
views
301
downloads
0
comments
6-002-EulerCromerPendulum-ModelingScenario
This activity introduces students to the concept of numerical stability. While modeling a simple pendulum, students compare performance of the semi-implicit Euler-Cromer method with Euler's method and the higher-order Improved Euleror algorithm.
pendulum
semi-implicit methods
Euler-Cromer
numerical solvers
Potential Scenario
172
views
51
downloads
0
comments
2017-Sim-EtAl-Optimal control of a coupled tanks system with model-reality differences
In this paper, an efficient computational approach is proposed to optimize and control a coupled tanks system.
optimal control
flow
tanks
coupled tanks
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