Skip to Main Content
Powered by QUBES

Resources

Text Search:
Applied Filters
    Potential Scenario
    142

    views

    49

    downloads

    0

    comments

    1999-T_Chen-HL_He-GM_Church-S_Shafer-Modeling Gene Expression with Differential Equations
    The paper proposes and give great detail for a differential equation model for gene expression with two methods for constructing the model from a set of temporal data.
    gene expressiongenekineticgene translationgene transcription
    Free Online Textbook
    464

    views

    95

    downloads

    0

    comments

    2012-Brian_Ingalls-Mathematical Modelling in Systems Biology An Introduction
    This is a comprehensive text with much biology background to motivate the mathematical modeling, exercises and answers, and many rich examples.
    spatialsensitivity analysisgene regulatory networksstochasticbifurcationmetabolic networkselectrophysiologytransductionrate lawsbiochemical reactions
    Potential Scenario
    171

    views

    44

    downloads

    0

    comments

    2015-Sivakumar-EtAl-Approximate Analytical Expression of Concentrations in a Kinetic Model for Biogas Generation from Banana Waste
    The initial value problem in a kinetic model for biogas generation from banana waste is discussed. The model involves the system of non-linear differential equations which has variety of non-linear rate function.
    chemical kineticsMichaelis-Menten kineticsanaerobic digestionacidogenic stepsbananamethanogenic stepswastes
    Potential Scenario
    173

    views

    44

    downloads

    0

    comments

    2017-Helen-Byrne-Further Mathematics Biology
    These studies will be in the context of ecological, biological and biochemical applications.
    epidemicschemotaxisenzyme-substrateion channelsnerve pulsesgene proagationtumour
    Potential Scenario
    133

    views

    73

    downloads

    0

    comments

    2015-Pendrill-Eager-Free fall and harmonic oscillations analyzing trampoline jumps
    In this work, the motion on a trampoline is modelled by assuming a linear relation between force and deflection, giving harmonic oscillations for small amplitudes.
    Accelerometersfree falljumptrampoline
    Potential Scenario
    119

    views

    53

    downloads

    0

    comments

    2008-Brewer-EtAl-Fitting ordinary differential equations to short time course data
    In this paper, we present a survey of existing algorithms and describe the main approaches. We also introduce and evaluate a new efficient technique for estimating ODEs linear in parameters particularly suited to situations where noise levels are...
    time seriesEvaluation SPLINEgeneleast squaresbifurcation
    Technique Narrative
    757

    views

    221

    downloads

    0

    comments

    7-006-LaplaceTransformBirth-TechniqueNarrative
    We present a way of introducing the Laplace Transform as the continuous analogue of a power series expression of a function.
    Transformationspower series
    Free Online Textbook
    148

    views

    51

    downloads

    0

    comments

    2012-Brian_Ingalls-Mathematical_Modelling_in_Systems_Biology
    This text provides an introduction to dynamic mathematical modeling of cellular processes. The emphasis is on using computational tools to investigate models of cellular phenomena.
    biologygene regulatory networksModelsmetabolic networkssignal transduction pathwayselectrophysiology
    Potential Scenario
    139

    views

    47

    downloads

    0

    comments

    2003-Bohren-Dimensional analysis-falling bodies--fine art of not solving differential equations
    Dimensional analysis is a simple, physically transparent and intuitive method for obtaining approximate solutions to physics problems, especially in mechanics.
    falling bodydimensional analysisdrag
    Potential Scenario
    1248

    views

    47

    downloads

    0

    comments

    2000-Erdman-Morelock-A Study of Kinetics The Estimation and Simulation of Systems of First-Order Differential Equations
    This paper introduces new and old features of the SAS System for the estimation and simulation of systems of first-order differential equations with emphasis on examples in kinetics.
    kineticsSAScompartmentpharmacokinetics
    Potential Scenario
    183

    views

    74

    downloads

    0

    comments

    1996-D_Erdman-MM_Morelock-A Study of Kinetics
    This paper introduces new and old features of the SAS System for the estimation and simulation of systems of first-order differential equations with emphasis on examples in kinetics.
    simulationkineticsparameter estimationEnzymesubstratesavingscompartmentstomachbloodginseng
    Potential Scenario
    165

    views

    57

    downloads

    0

    comments

    2019-Hu-Treinen-One-step_method_for_modelling_longitudinal_data_with_differential_equations
    This study proposes a new approach to estimate the parameters in differential equation models used to describe non-linear trajectories of longitudinal data.
    simulationparameter estimationshoppingfittingbehaviour
    Modeling Scenario
    358

    views

    351

    downloads

    0

    comments

    4-039-FallingDarts-ModelingScenario
    we develop, solve, and analyze a second order differential equation model for free fall incorporating air resistance. Students solve the model using two methods -- reduction of order and separation of variables, and method of undetermined...
    optimizationresistanceterminal velocitymuzzle velocitydrag coefficientfree fallair drag
    Potential Scenario
    134

    views

    60

    downloads

    0

    comments

    2016-Barbarossa-Kuttler-Mathematical Modeling of Bacteria Communication in Continuous Cultures
    This paper presents a simple system of delay differential equations (DDEs) for quorum sensing of Pseudomonas putida with one positive feedback plus one (delayed) negative feedback mechanism.
    gene regulatory networkschemostatbifurcationNumerical Simulationquorum sensing
    Potential Scenario
    182

    views

    49

    downloads

    0

    comments

    2012-Transtrum-Qiu-Optimal experiment selection for parameter estimation in biological differential equation models
    We explore the question to what extent parameters can be efficiently estimated by appropriate experimental selection.
    experimental designsystems biologyAssociation & Data Fittingreaction ratesdecay rates
    Modeling Scenario
    279

    views

    186

    downloads

    0

    comments

    1-025-MixingItUp-ModelingScenario
    Students build three different models for levels of salt in a tank of water and at each stage the level of complexity increases with attention to nuances necessary for success.
    compartmentsalttankmixing
    Modeling Scenario
    266

    views

    252

    downloads

    0

    comments

    1-052-SaltWaterTanks-ModelingScenario
    We offer three mixing problems, of increasing order of difficulty, in which salt is coming into a tank of water and upon instantaneous mixing is leaving the tank.
    salttankmixing
    Potential Scenario
    148

    views

    102

    downloads

    0

    comments

    2017-Fred_Adler-Mathematically Modeling Asthma
    Our Asthma models have examined how a viral infection can tip the immune system into a different state, with the potential to predispose an individual to future asthma
    infectionasthmaimmune responserhinovirus
    Modeling Scenario
    297

    views

    178

    downloads

    0

    comments

    5-010-DNADegradation-ModelingScenario
    We ask students to use the system of first order linear differential equations given in a source paper and estimates of the data from laboratory procedures from a plot to estimate the parameters and complete the modeling process.
    DNA\kinetisplasmaratpharmacokinetis