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Downloads
Views
Date
Relevance
Potential Scenario
123
views
45
downloads
0
comments
1999-T_Chen-HL_He-GM_Church-S_Shafer-Modeling Gene Expression with Differential Equations
The paper proposes and give great detail for a differential equation model for gene expression with two methods for constructing the model from a set of temporal data.
gene expression
gene
kinetic
gene translation
gene transcription
Free Online Textbook
416
views
86
downloads
0
comments
2012-Brian_Ingalls-Mathematical Modelling in Systems Biology An Introduction
This is a comprehensive text with much biology background to motivate the mathematical modeling, exercises and answers, and many rich examples.
spatial
sensitivity analysis
gene regulatory networks
stochastic
bifurcation
metabolic networks
electrophysiology
transduction
rate laws
biochemical reactions
Potential Scenario
151
views
42
downloads
0
comments
2015-Sivakumar-EtAl-Approximate Analytical Expression of Concentrations in a Kinetic Model for Biogas Generation from Banana Waste
The initial value problem in a kinetic model for biogas generation from banana waste is discussed. The model involves the system of non-linear differential equations which has variety of non-linear rate function.
chemical kinetics
Michaelis-Menten kinetics
anaerobic digestion
acidogenic steps
banana
methanogenic steps
wastes
Potential Scenario
156
views
37
downloads
0
comments
2017-Helen-Byrne-Further Mathematics Biology
These studies will be in the context of ecological, biological and biochemical applications.
epidemics
chemotaxis
enzyme-substrate
ion channels
nerve pulses
gene proagation
tumour
Potential Scenario
116
views
66
downloads
0
comments
2015-Pendrill-Eager-Free fall and harmonic oscillations analyzing trampoline jumps
In this work, the motion on a trampoline is modelled by assuming a linear relation between force and deflection, giving harmonic oscillations for small amplitudes.
Accelerometers
free fall
jump
trampoline
Potential Scenario
105
views
40
downloads
0
comments
2008-Brewer-EtAl-Fitting ordinary differential equations to short time course data
In this paper, we present a survey of existing algorithms and describe the main approaches. We also introduce and evaluate a new efficient technique for estimating ODEs linear in parameters particularly suited to situations where noise levels are...
time series
Evaluation SPLINE
gene
least squares
bifurcation
Technique Narrative
716
views
193
downloads
0
comments
7-006-LaplaceTransformBirth-TechniqueNarrative
We present a way of introducing the Laplace Transform as the continuous analogue of a power series expression of a function.
Transformations
power series
Free Online Textbook
129
views
47
downloads
0
comments
2012-Brian_Ingalls-Mathematical_Modelling_in_Systems_Biology
This text provides an introduction to dynamic mathematical modeling of cellular processes. The emphasis is on using computational tools to investigate models of cellular phenomena.
biology
gene regulatory networks
Models
metabolic networks
signal transduction pathways
electrophysiology
Potential Scenario
118
views
41
downloads
0
comments
2003-Bohren-Dimensional analysis-falling bodies--fine art of not solving differential equations
Dimensional analysis is a simple, physically transparent and intuitive method for obtaining approximate solutions to physics problems, especially in mechanics.
falling body
dimensional analysis
drag
Potential Scenario
875
views
39
downloads
0
comments
2000-Erdman-Morelock-A Study of Kinetics The Estimation and Simulation of Systems of First-Order Differential Equations
This paper introduces new and old features of the SAS System for the estimation and simulation of systems of first-order differential equations with emphasis on examples in kinetics.
kinetics
SAS
compartment
pharmacokinetics
Potential Scenario
164
views
55
downloads
0
comments
1996-D_Erdman-MM_Morelock-A Study of Kinetics
This paper introduces new and old features of the SAS System for the estimation and simulation of systems of first-order differential equations with emphasis on examples in kinetics.
simulation
kinetics
parameter estimation
Enzyme
substrate
savings
compartment
stomach
blood
ginseng
Potential Scenario
147
views
48
downloads
0
comments
2019-Hu-Treinen-One-step_method_for_modelling_longitudinal_data_with_differential_equations
This study proposes a new approach to estimate the parameters in differential equation models used to describe non-linear trajectories of longitudinal data.
simulation
parameter estimation
shopping
fitting
behaviour
Modeling Scenario
316
views
316
downloads
0
comments
4-039-FallingDarts-ModelingScenario
we develop, solve, and analyze a second order differential equation model for free fall incorporating air resistance. Students solve the model using two methods -- reduction of order and separation of variables, and method of undetermined...
optimization
resistance
terminal velocity
muzzle velocity
drag coefficient
free fall
air drag
Potential Scenario
121
views
56
downloads
0
comments
2016-Barbarossa-Kuttler-Mathematical Modeling of Bacteria Communication in Continuous Cultures
This paper presents a simple system of delay differential equations (DDEs) for quorum sensing of Pseudomonas putida with one positive feedback plus one (delayed) negative feedback mechanism.
gene regulatory networks
chemostat
bifurcation
Numerical Simulation
quorum sensing
Potential Scenario
165
views
47
downloads
0
comments
2012-Transtrum-Qiu-Optimal experiment selection for parameter estimation in biological differential equation models
We explore the question to what extent parameters can be efficiently estimated by appropriate experimental selection.
experimental design
systems biology
Association & Data Fitting
reaction rates
decay rates
Modeling Scenario
246
views
181
downloads
0
comments
1-025-MixingItUp-ModelingScenario
Students build three different models for levels of salt in a tank of water and at each stage the level of complexity increases with attention to nuances necessary for success.
compartment
salt
tank
mixing
Modeling Scenario
240
views
229
downloads
0
comments
1-052-SaltWaterTanks-ModelingScenario
We offer three mixing problems, of increasing order of difficulty, in which salt is coming into a tank of water and upon instantaneous mixing is leaving the tank.
salt
tank
mixing
Potential Scenario
132
views
94
downloads
0
comments
2017-Fred_Adler-Mathematically Modeling Asthma
Our Asthma models have examined how a viral infection can tip the immune system into a different state, with the potential to predispose an individual to future asthma
infection
asthma
immune response
rhinovirus
Modeling Scenario
256
views
157
downloads
0
comments
5-010-DNADegradation-ModelingScenario
We ask students to use the system of first order linear differential equations given in a source paper and estimates of the data from laboratory procedures from a plot to estimate the parameters and complete the modeling process.
DNA\kinetis
plasma
rat
pharmacokinetis
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