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Downloads
Views
Date
Relevance
Free Online Textbook
148
views
51
downloads
0
comments
2012-Brian_Ingalls-Mathematical_Modelling_in_Systems_Biology
This text provides an introduction to dynamic mathematical modeling of cellular processes. The emphasis is on using computational tools to investigate models of cellular phenomena.
biology
gene regulatory networks
Models
metabolic networks
signal transduction pathways
electrophysiology
Potential Scenario
134
views
60
downloads
0
comments
2016-Barbarossa-Kuttler-Mathematical Modeling of Bacteria Communication in Continuous Cultures
This paper presents a simple system of delay differential equations (DDEs) for quorum sensing of Pseudomonas putida with one positive feedback plus one (delayed) negative feedback mechanism.
gene regulatory networks
chemostat
bifurcation
Numerical Simulation
quorum sensing
Potential Scenario
182
views
49
downloads
0
comments
2012-Transtrum-Qiu-Optimal experiment selection for parameter estimation in biological differential equation models
We explore the question to what extent parameters can be efficiently estimated by appropriate experimental selection.
experimental design
systems biology
Association & Data Fitting
reaction rates
decay rates
Free Online Textbook
464
views
95
downloads
0
comments
2012-Brian_Ingalls-Mathematical Modelling in Systems Biology An Introduction
This is a comprehensive text with much biology background to motivate the mathematical modeling, exercises and answers, and many rich examples.
spatial
sensitivity analysis
gene regulatory networks
stochastic
bifurcation
metabolic networks
electrophysiology
transduction
rate laws
biochemical reactions
Potential Scenario
119
views
53
downloads
0
comments
2008-Brewer-EtAl-Fitting ordinary differential equations to short time course data
In this paper, we present a survey of existing algorithms and describe the main approaches. We also introduce and evaluate a new efficient technique for estimating ODEs linear in parameters particularly suited to situations where noise levels are...
time series
Evaluation SPLINE
gene
least squares
bifurcation
Potential Scenario
142
views
49
downloads
0
comments
1999-T_Chen-HL_He-GM_Church-S_Shafer-Modeling Gene Expression with Differential Equations
The paper proposes and give great detail for a differential equation model for gene expression with two methods for constructing the model from a set of temporal data.
gene expression
gene
kinetic
gene translation
gene transcription
Potential Scenario
146
views
92
downloads
0
comments
2017-Alex_Honchar-Neural Networks For Solving Differential Equations
In this post I want to show how I applied simple feed-forward NNs to different differential equations with increasing complexity: ODEs, second order ODEs, and, finally, PDEs.
neural networks
Cybenko theorem
diffusion equation
fluid dynamics
Potential Scenario
154
views
48
downloads
0
comments
2019-Zhu_EtAl-Partial_differential_equation_modeling_of_rumor_propagation
This paper defines a spatial distance in online social networks by clustering and then proposes a partial differential equation model with a time delay.
social networks
rumor
propogation
Potential Scenario
128
views
48
downloads
0
comments
2010-Shianga-EtAl-Computational model of the human glucose-insulin regulatory system
A computational model of insulin secretion and glucose metabolism for assisting the diagnosis of diabetes mellitus in clinical research is introduced. The
glucose tolerance test
sum of squared residuals
multiple shooting method
cost function
Potential Scenario
137
views
55
downloads
0
comments
2008-Abramson-Mathematical modeling of the spread of infectious diseases
These are informal notes, mostly based on the bibliography listed at the end and on recent papers in the field. The practical use of these models is based on the fact that they can be kept realistic enough.
infectious disease
bibliography
epidemic
cowpox
smallpox
complex networks
spread disease
Potential Scenario
134
views
46
downloads
0
comments
2008-Abramson-Mathematical modeling of the spread of infectious diseases
These are informal notes, mostly based on the bibliography listed at the end and on recent papers in the field. The practical use of these models is based on the fact that they can be kept realistic enough.
infectious disease
epidemic
cowpox
smallpox
complex networks
Potential Scenario
203
views
72
downloads
0
comments
2017-GR_Gustafson-Differential Equations Course Materials
There are many applications from compartment and cascade analysis, recycling brine tank, home heating with multiple rooms, chemostat, microbes, heartbeats, lidocaine, nutrient flow in an aquarium, biomass transfer, pesticides, forecasting prices,...
chemostat
microbes
biomass
forecasting
transfer
compartment
pesticides
earthquake
tank
heating
lidocaine
brine
heartbeats
nutrient flow
aquarium
electric networks
circuits
logging
building
cascade
Potential Scenario
163
views
50
downloads
0
comments
2018-Yu-Craciun-Mathematical_Analysis_of_Chemical_Reaction_Systems
These models of chemical reactions are systems of coupled nonlinear differential equations on the positive orthant.
biochemical
kinetics
reaction
reaction network
mass action
Potential Scenario
173
views
44
downloads
0
comments
2017-Helen-Byrne-Further Mathematics Biology
These studies will be in the context of ecological, biological and biochemical applications.
epidemics
chemotaxis
enzyme-substrate
ion channels
nerve pulses
gene proagation
tumour
Potential Scenario
182
views
49
downloads
0
comments
2009-Chellaboina-EtAl-Modeling And Analysis-Mass Action Kinetics
Mass-action kinetics are used in chemistry and chemical engineering to describe the dynamics of systems of reactions, that is, reaction networks. These models are a special form of compartmental systems, involving mass- and energy-balance relations.
dynamical systems
chemical reaction
reaction network
mass action
Free Online Textbook
142
views
66
downloads
0
comments
2015-H_Sayama-Intro to Modeling and Analysis of Complex Systems
Introduces students to mathematical/computational modeling and analysis developed in the emerging interdisciplinary field of Complex Systems Science.
textbook
text
Potential Scenario
151
views
95
downloads
0
comments
2014-John_Cimbala-Dynamic System Response
In this learning module, we discuss the dynamic system response of sensors and their associated electronic circuits.
sensor networks
oscillations
system response
electronic circuit
Potential Scenario
211
views
26
downloads
0
comments
2014-John_Cain-Chemical Reaction Kinetics Mathematical Underpinnings
The usual way of deriving kinetic equations involves application of the principle of conservation of mass in conjunction with the law of mass action. Here, examples of kinetic models for several basic processes are discussed.
kinetics
biochemical reaction
reactants
products
Potential Scenario
148
views
103
downloads
0
comments
2017-Fred_Adler-Mathematically Modeling Asthma
Our Asthma models have examined how a viral infection can tip the immune system into a different state, with the potential to predispose an individual to future asthma
infection
asthma
immune response
rhinovirus
Modeling Scenario
298
views
179
downloads
0
comments
5-010-DNADegradation-ModelingScenario
We ask students to use the system of first order linear differential equations given in a source paper and estimates of the data from laboratory procedures from a plot to estimate the parameters and complete the modeling process.
DNA\kinetis
plasma
rat
pharmacokinetis
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