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Downloads
Views
Date
Relevance
Potential Scenario
135
views
45
downloads
0
comments
1999-T_Chen-HL_He-GM_Church-S_Shafer-Modeling Gene Expression with Differential Equations
The paper proposes and give great detail for a differential equation model for gene expression with two methods for constructing the model from a set of temporal data.
gene expression
gene
kinetic
gene translation
gene transcription
Potential Scenario
165
views
42
downloads
0
comments
2017-Helen-Byrne-Further Mathematics Biology
These studies will be in the context of ecological, biological and biochemical applications.
epidemics
chemotaxis
enzyme-substrate
ion channels
nerve pulses
gene proagation
tumour
Potential Scenario
188
views
53
downloads
0
comments
2003-Yildirim-Mackey-Feedback Regulation in the Lactose Operon
A mathematical model for the regulation of induction in the lac operon in Escherichia coli is presented.
mRNA
lactose
lactose operon
feedback regulation
Potential Scenario
108
views
49
downloads
0
comments
2008-Brewer-EtAl-Fitting ordinary differential equations to short time course data
In this paper, we present a survey of existing algorithms and describe the main approaches. We also introduce and evaluate a new efficient technique for estimating ODEs linear in parameters particularly suited to situations where noise levels are...
time series
Evaluation SPLINE
gene
least squares
bifurcation
Free Online Textbook
139
views
47
downloads
0
comments
2012-Brian_Ingalls-Mathematical_Modelling_in_Systems_Biology
This text provides an introduction to dynamic mathematical modeling of cellular processes. The emphasis is on using computational tools to investigate models of cellular phenomena.
biology
gene regulatory networks
Models
metabolic networks
signal transduction pathways
electrophysiology
Modeling Scenario
287
views
266
downloads
0
comments
1-190-IntroClass-ModelingScenario
Students go through development of ideas in mathematical modeling with differential equations. They encounter fundamental ideas of unlimited population growth, limited population growth and a predator prey system.
population dynamics
predator-prey
logistic
exponential
graphical interpretations
qualitative analysis
Potential Scenario
128
views
58
downloads
0
comments
2016-Barbarossa-Kuttler-Mathematical Modeling of Bacteria Communication in Continuous Cultures
This paper presents a simple system of delay differential equations (DDEs) for quorum sensing of Pseudomonas putida with one positive feedback plus one (delayed) negative feedback mechanism.
gene regulatory networks
chemostat
bifurcation
Numerical Simulation
quorum sensing
Potential Scenario
174
views
47
downloads
0
comments
2012-Transtrum-Qiu-Optimal experiment selection for parameter estimation in biological differential equation models
We explore the question to what extent parameters can be efficiently estimated by appropriate experimental selection.
experimental design
systems biology
Association & Data Fitting
reaction rates
decay rates
Potential Scenario
140
views
98
downloads
0
comments
2017-Fred_Adler-Mathematically Modeling Asthma
Our Asthma models have examined how a viral infection can tip the immune system into a different state, with the potential to predispose an individual to future asthma
infection
asthma
immune response
rhinovirus
Free Online Textbook
451
views
89
downloads
0
comments
2012-Brian_Ingalls-Mathematical Modelling in Systems Biology An Introduction
This is a comprehensive text with much biology background to motivate the mathematical modeling, exercises and answers, and many rich examples.
spatial
sensitivity analysis
gene regulatory networks
stochastic
bifurcation
metabolic networks
electrophysiology
transduction
rate laws
biochemical reactions
Modeling Scenario
273
views
169
downloads
0
comments
5-010-DNADegradation-ModelingScenario
We ask students to use the system of first order linear differential equations given in a source paper and estimates of the data from laboratory procedures from a plot to estimate the parameters and complete the modeling process.
DNA\kinetis
plasma
rat
pharmacokinetis
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