Skip to Main Content
Powered by QUBES

Resources

Text Search:
Applied Filters
    Potential Scenario
    125

    views

    68

    downloads

    0

    comments

    2015-The European Bioinformatics Institute-BioModels Database
    BioModels Database is a repository of computational models of biological processes. Models described from literature are manually curated and enriched with cross-references.
    computational biologyBioModels Databasebio databaselife science experiments
    Article or Presentation
    138

    views

    67

    downloads

    0

    comments

    2015-European_Bioinformatics_Institute-Bio-Models-Database
    Bio Models Database is a repository of computational models of biological processes. Models described from literature are manually curated and enriched with cross-references. All models are provided in the Public Domain.
    biologydatabasebioinformaticsModelscomputational models
    Potential Scenario
    160

    views

    57

    downloads

    0

    comments

    2017-D_Goulet-Modeling, Simulating, and Parameter Fitting of Biochemical Kinetic Experiments
    In many chemical and biological applications, systems of differential equations containing unknown parameters are used to explain empirical observations and experimental data. The differential equations are typically nonlinear.
    optimizationBiochemistrysensitivity analysischromatographymass actioncluster analysisconservation lawsdimerizationestrogen receptor protein
    Potential Scenario
    125

    views

    38

    downloads

    0

    comments

    2014-Yahdi-EtAl-Modeling and Sensitivity Analysis of the Role of Biodiversity to Control Pest Damage in Agroecosystems
    The paper provides a mathematical framework for cost-effective and environmentally safe strategies to minimize alfalfa damage from pests in alfalfa agroecosystems with optimal biodiversity levels.
    sensitivity analysispredatorsteady statealfalfaShannon diversity indexplant herbivore
    Modeling Scenario
    277

    views

    136

    downloads

    0

    comments

    1-111-SpreadOfInformation-ModelingScenario
    Students perform experiments to model spread of information within a population. Students collect data, determine essential components and parameters and build a mathematical model culminating with a separable linear first order differential...
    datalogisticracismprejudicemisinformationmemesspreaddisinformationinformationliesGoogle Trendscoinspennies
    Modeling Scenario
    320

    views

    202

    downloads

    0

    comments

    1-142-WaterBottles-ModelingScenario
    This project involves the application of Newton's law of cooling to the study of insulated water bottles. Students have the option to conduct experiments with their own bottles outside of class or use data included in the student version.
    data collectionexperimenthalf-lifeNewton's Law of Coolingwater bottle
    Modeling Scenario
    278

    views

    367

    downloads

    0

    comments

    1-017-DiseaseSpread-ModelingScenario
    Using a grid and m&m candies, we simulate the spread of disease. Students conduct the simulation and collect data to estimate parameters (in several ways) in a differential equation model for the spread of the disease.
    Potential Scenario
    157

    views

    41

    downloads

    0

    comments

    2012-Transtrum-Qiu-Optimal experiment selection for parameter estimation in biological differential equation models
    We explore the question to what extent parameters can be efficiently estimated by appropriate experimental selection.
    experimental designsystems biologyAssociation & Data Fittingreaction ratesdecay rates
    Free Online Textbook
    134

    views

    50

    downloads

    0

    comments

    2017-Craig_Tracy-Lectures on Differential Equations
    These notes are for a one-quarter course in differential equations. The approach is to tie the study of differential equations to specific applications in physics with an emphasis on oscillatory systems.
    physicsoscillation
    Article or Presentation
    250

    views

    717

    downloads

    0

    comments

    2020-TeachingModule-SpreadOfCommonColdSimulation
    This simulation is meant to introduce the idea of a differential equation model and investigate the impact of heightened hygiene and decreased interactions on the spread of an infectious disease. The focus of this simulation is on the common cold.
    simulationmoduleinfectious diseasediseasespreadTeaching Modulespread of disease
    Modeling Scenario
    1232

    views

    832

    downloads

    0

    comments

    1-030-EyeModel-ModelingScenario
    We offer a mathematical modeling experience using differential equations to model the volume of an intraocular gas bubble used by ophthalmologists to aid the healing of a surgically repaired region of the retina.
    retinal surgeryAkaike Information CriterionSpanishsum of square errorssurgeryretionaophthalmologyeyeintraocular gas bubble
    Modeling Scenario
    361

    views

    145

    downloads

    0

    comments

    1-001s-StochasticMDeathImmigration-ModelingScenario
    We develop a mathematical model of a death and immigration process using m&ms as a stochastic process with the help of probability generating functions (pgf). We start with 50 m&ms in a bag.
    simulationdatalogisticimmigrationstochasticdeathfitting
    Modeling Scenario
    253

    views

    151

    downloads

    0

    comments

    1-071-NewtonWatson-ModelingScenario
    Sherlock Holmes determines the time of death for a body found on a street in London and we need to reproduce his astute analysis
    temperaturedeathNewton's Law of Coolingtime of deathSherlock Holmes
    Modeling Scenario
    257

    views

    232

    downloads

    0

    comments

    1-098-NeuronDetection-ModelingScenario
    Students study a linear, first order, one-dimensional ordinary differential equation (ODE) and learn how it can help understand basics of neural dynamics. The modeling framework is known in mathematical neuroscience as ``integrate-and-fire''...
    biologyneuroscienceneuron physiologyvoltageintegrate and firethrefholscoincidence detectionRC circuit
    Modeling Scenario
    195

    views

    225

    downloads

    0

    comments

    1-137-SheepGraze-ModelingScenario
    In this activity, students will apply graphical analysis (such as phase lines) to determine the long-term predictions of a differential equation model for pasture grass using two different formulas for the herbivore consumption rate.
    herbivoreplantphase linesbifurcationoverexploitationsheepgraze
    Modeling Scenario
    273

    views

    296

    downloads

    0

    comments

    1-139-PlantsVsHerbivores-ModeliongScenario
    In this activity, students will apply a variety of techniques for analyzing nonlinear systems (e.g., nullclines, linearization, and technologies for drawing phase portraits) to study plant-herbivore models.
    ecologynullclinesherbivoreplant-herbivore interactionsplantlinearization
    Modeling Scenario
    478

    views

    253

    downloads

    0

    comments

    1-001a-MMDeathImmigration-Variation-ModelingScenario
    We model exponential death with m&m's as well as death with immigration.
    simulationdatam&mimmigrationdeath
    Modeling Scenario
    259

    views

    339

    downloads

    0

    comments

    1-037-CommonColdSpread-ModelingScenario
    This modeling scenario guides students to simulate and investigate the spread of the common cold in a residence hall. An example floor plan is given, but the reader is encouraged to use a more relevant example.
    diseasecommon coldresidence hall
    Article or Presentation
    466

    views

    80

    downloads

    0

    comments

    2007-John_Jungck-Ten_Equations_that_Changed_Biology-Mathematics_in_Problem-Solving_Biology_Curricula The author
    These equations were selected upon the basis of wide-spread recognition of the value of the models.
    biologyequationsten equations
    Potential Scenario
    135

    views

    35

    downloads

    0

    comments

    1999-Kowalczyk-Hausknecht-Using DEs To Model Real World Data
    With the increasing availability of easy to use interactive differential equation software, we convinced ourselves to completely redesign the way we teach differential equations.
    circuitTorricelli's LawHooke's LawRC circuitharmonic oscillatorglucoseglucose tolerance test