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    Developing a phylogram from computational resources.
    This laboratory module, published on CourseSource, leads introductory biology students in the exploration of a basic set of bioinformatics concepts and tools.

    Keywords: phylogeneticsbioinformaticssequencingFASTANCBINIBLSEalgorithmsBLASTmultiple sequence alignmentsequence similarityneighbor-joining distance matrixCourseSourcephylogrampercent identity matrix

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    Constructing Phylogenies using Herbarium Specimens
    This lab is intended as an introduction to a plant systematics course. Students work in groups of two to apply what they have learned about plant structures to develop a character matrix based on a...

    Keywords: botanyphylogenyherbariumdistance learningPlant systematicscharacter matrix

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    Sequence Similarity: An inquiry based and "under the hood" approach for incorporating molecular sequence alignment in introductory undergraduate biology courses
    This laboratory module, published on CourseSource, leads introductory biology students in the exploration of a basic set of bioinformatics concepts and tools.

    Keywords: phylogeneticsbioinformaticssequencingFASTANCBINIBLSEalgorithmsincubatorsBLASTmultiple sequence alignmentsequence similarityBLOSUM scoring matrixneighbor-joining distance matrixCourseSourcephylogramZika virus

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    Performing a Population Viability Analysis from Data Students Collect on a Local Plant
    Experiment included in Teaching Issues and Experiments in Ecology (TIEE) Volume 9

    Keywords: RResources @ ESA - TIEEmatrix model

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    Bioinformatics: Investigating Sequence Similarity - A Plant Biology Approach
    This laboratory module is a modification of the original published on CourseSource with a focus on plant biology. In the final activity, students conduct a BLAST to compare histone protein...

    Keywords: phylogeneticsbioinformaticssequencingFASTANCBIplant biologyNIBLSEalgorithmsincubatorsPlant and Fungal EvolutionBLASTmultiple sequence alignmentsequence similarityBLOSUM scoring matrixneighbor-joining distance matrixCourseSourcephylogram

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    Avian Censys Analysis
    This Swirl course uses ecological data of bird counts and habitat variables to estimate inter-observer variability and the relationship of birds with habitat variables.

    Keywords: ecologyregressionaverageserror estimates

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    Mentorship Check-In
    We provide a scaffolded discussion for research mentors and mentees to evaluate progress toward their goals, expand conceptions of mentorship, and share ideas to enhance belonging in lab.

    Keywords: Undergraduate MentorshipMentorshipFostering a Sense of Belonging

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    Sequence Similarity Resource Adaptation: Exploring Ebola Virus
    This adaptation of the sequence similarity resource provides biology students with a basic set of bioinformatics concepts and tools. These concepts and tools are used to explore relationships...

    Keywords: phylogeneticsbioinformaticsEbolasequencingFASTANCBINIBLSEalgorithmsincubatorsBLASTmultiple sequence alignmentsequence similarityBLOSUM scoring matrixneighbor-joining distance matrixCourseSourcephylogram

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    BioTA Podcast Episode #34 Biofilms Podcast Overview
    BioTA Episode #34: Biofilms Authors: Seth Higbee1, Pankaj Mehrotra2, J. Phil Gibson1 Prokaryotes are often taught to us as being free living single-celled organisms that lack membrane bound...

    Keywords: microbiologybacteriaprokaryotesBiofilmsExtracellular Polymeric Substances (EPS)16s Ribosomal RNA

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    Introductory Video and worksheets on Module 1 and 2 on "Sequence Similarity: An inquiry based and under the hood..."
    The video walks the students to complete Module 1 and 2 on Sequence Similarly and Alignment adapted from Tapprich (2019) and Hudson Alpha that teaches these modules within the context of the...

    Keywords: bioinformaticssequencingFASTANCBINIBLSEalgorithmsBLASTmultiple sequence alignmentsequence similarityBLOSUM scoring matrixCourseSource

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    iBEARS Poster
    A description of the new NSF INCLUDES iBEARS network including background, project goals, project outcomes, connections to be made through QUBES, and future directions.
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    MathBench: Biodiversity Assessment of Stream Biota
    The MathBench module, "The Case of the Missing Mountaintop" introduces students to the concept of biodiversity and measures used to quantify biodiversity and stream health. Students investigate the...

    Keywords: ecology labCommunity Ecologyenvironmental scienceconservation ecologyStream ecology

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    Cladistic Analysis Lesson Using Bats
    Phylogenetic analysis can be a challenging concept to grasp for undergraduate biology students. This cladistic analysis lesson utilizes the amazingly diverse Order Chiroptera as a model to...

    Keywords: batsphylogeny and classificationVertebrate Morphologycladistic analysisbat evolution

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    Green Infrastructure/Green Roofs (Project Eddie)
    Runoff in urban areas is an increasingly important issue when it comes to water quality. It is a major hydrologic issue in New York City, as urban infrastructure creates excess runoff and...

    Keywords: climate changeProject EDDIEWater cycle

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    Atlas of Black Scholarship for Inclusive and Racially Diverse STEM Curricula – Volume I
    The contributions of Black scientists to the advancement of STEM are poorly represented in course materials. Here, we provide an Atlas of Black Scholarship to help Life Sciences and Chemistry...

    Keywords: BLACK SCIENTISTS IN STEMRACIALLY-RESPONSIVE PEDAGOGYBIOLOGY AND CHEMISTRY EDUCATIONDIVERSITY IN STEM CURRICULUM

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    Agents of change: Determining effects of pollution on marine environments through data interpretation
    In this lesson, students discuss the effects of disturbance in marine environments with a focus on pollution. They also evaluate the anthropogenic causes and consequences of pollution on a variety...

    Keywords: fishgraph interpretationfmnmarine ecosystemsmarine ecologymicroplastic pollutionEcological Disturbanceintermediate disturbance hypothesisstudent STEM identitypollutionBioGraphIrepresentation in STEMoil spill

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