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The QUBES platform hosts hundreds of teaching materials, reference materials, and cloud-based software free to use and adapt using open Creative Commons licenses.

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    An Introduction to Statistical Learning: with Applications in R
    This book provides an introduction to statistical learning methods and is aimed for upper level undergraduate students, masters students and Ph.D. students in the non-mathematical sciences.

    Keywords: linear regressiontextbookclassificationcourseclustering coefficientR programming languagestatistical learningmachine learninglogistic regressionresamplingmodel selectionGeneralized additive modelsdecision treesprincipal components analysisMOOCResources @ QUBES - Teaching & Reference

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    Towards better modelling and decision support: Documenting model development, testing, and analysis using TRACE
    We introduce TRACE, a framework for documenting model testing and analysis. TRACE is based on the recently proposed framework of model "evaluation" , and is designed to make models fit for...

    Keywords: standardizationgood modelling practicerisk assessmentdecision supportTRACEResources @ QUBES - Teaching & Reference

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    A BioGraphy of Life: How Graph Theory Makes Mathematics Recognizable, Relevant, and Research-Rich in Biology Education
    Presentation given at the 2106 SIAM Conference on Applied Mathematics Education on graph theory.

    Keywords: graph theory

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    Studying phylogeny by producing phylogenetic trees of primates using morphological and molecular characteristics.
    An assignment constructing phylogenetic trees using shared, derived morphological traits and molecular differences among 18 primate species and two outlier species has been developed. Skull and...
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    Ecological Forecasting Repository of Online Educational Resources
    This pdf provides a list of over 100 educational resources related to tools and skills related to ecological forecasting.

    Keywords: statisticsvideosecologymodel buildingmodulespythonecological forecastingonline course materialcode repositoriesonline textbooksbasics of Rdata sourcesdata skillsforecast cycleapplying forecastsdecision science

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    OER For CURE Development BIOME 2021 Lightning Talk - YouTube
    Members of the Ciliate Genomics Consortium (CGG) formed a fall working group to brainstorm how to convert existing Course-based Undergraduate Research (CURE) curriculum modules, which have been...

    Keywords: CUREscourse-based research experiences (CUREs)STEM CUREs

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    Applying phylogenetic tree building in MEGA X to forensic applications for identifying unknown specimens
    This exercise is designed to guide a learner through the construction of phylogenetic trees as a means of addressing research questions in forensic science such as the identification of previously...

    Keywords: taxonomyBioinformatics and GenomicsDNA Barcodinginvertebrate phylogeneticsforensic entomology

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    Expanding the pipeline: Engaging urban secondary school and college students in science and the environment
    This speed talk will describe three education projects that engage urban minority students in science and the environment.
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    Counting the Forest and the Trees: Quantitative Undergraduate Biology Education and Synthesis (QUBES) is a tool for Vision and Change
    Presentation focusing on how QUBES plans to improve learning opportunities for all students enrolled in undergraduate biology courses, presented at Botany 2015.

    Keywords: QUBEScommunityconferencedigital tools

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    Biometeorology of Asthma in South Florida: From Statistical Analysis to Mathematical Modeling
    Part of the 2015 SMB Minisymposium: Topics in Biomathematics Education

    Keywords: data analysisdynamical systemsmathematical modelingsynchronizationasthmaimmune systemcomplex systemsfeedback loopsself-organized criticalitychaos

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    Applying Universal Design for Learning (UDL) Principles to Case Studies
    This is a presentation for the 2022 BIOME meeting.
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    Tree Biomass and Phenology
    This lesson centers around understanding the connection of tree biomass and phenology with climate change. It uses both swirl and LearnR lessons in the R programming language to help students make...
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    STEM Inclusive Teaching Practices Webinar Series: The Biocultural Labels Initiative
    The Biocultural (BC) Labels initiative is focused on accurate provenance, transparency and integrity in research engagements with Indigenous communities. ...

    Keywords: dataEquitynatural history museumsAttributionBiocultural LabelsTraditional Knowledge LabelsIndigenous data sovereigntyIndigenous rights

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    A class activity on classification
    Within the sciences, we are often talking of phylogenetic classification; hominin and non-human primate phylogenetic trees are often introduced in a course in biological anthropology. Students are...

    Keywords: hands-onphylogeny and classification

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    Teaching introductory bioinformatics with Jupyter notebook-based active learning
    Presentation on teaching introductory bioinformatics with Jupyter notebook-based active learning at the 2019 Great Lakes Bioinformatics Conference

    Keywords: biostatisticsstatistical analysisavian malariaSummer Workshop 2018

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    A Tough Choice in Watershed Management
    In this Team-based activity, students work in teams, playing the role of natural resource managers who must decide in which region to invest limited funding for nutrient reduction in streams....

    Keywords: Stream ecologyBox PlotsSpreadsheetGroup cooperative learningTeam-based LearningBiogeochemical cycles

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    An Introduction to agent-based modeling.
    Introductory level textbook based on a collection of lecture notes from an undergraduate course on agent-based modeling at Arizona State University.

    Keywords: textbookcurriculumNetLogoagent-based modelingIndividual & Agent Based Modelingcourseundergraduate educationResources @ QUBES - Teaching & Reference

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